Detailed information of component protein


Summary

Component ID T6CP003512
Component protein type TssG
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (342 a.a.); Nucleotide sequence (1026 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11920
Coordinate (Strand) 2637967..2638992 (+)
NCBI ID WP_015872012.1
RefSeq NC_012779
Uniprot ID C5B8M3_EDWI9
KEGG ID eic:NT01EI_2743
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 5.1e-97 18..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-341 MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGLTGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQNRLIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWDAQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERPSRLGDADDVVLQEPRDRLHAR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9715 - -


  Protein sequence: 342 a.a.    

>T6CP003512 NC_012779:2637967-2638992 [Edwardsiella ictaluri 93-146] [TssG]
MSAPQNRQSVLEQLYARPYDFDFFQAVRILELQQLRCGCQELPLRFRTHLSLATPASSIYALQPPVADQPQVMTINFMGL
TGPSGALPTRYTEMLLERRLQHRDQTAHHFFDLLNHRLITLFYQAWRKHQATADLACGLQADWRQMLLSLAGLGTPGLQN
RLIKDGVNDDVFAYYAGRFGARSLSEEGLRTLLTEYFSVPVEIQPFQGQWLKLDESDVLALGRQNCTLGEWPVLGRQVWD
AQSQFRIRLGPMNYKQFQAFLPGGKDFRALTKLVRFSIEIAVTFDIQLVLDAREVPPCTLGDSQAGAARPGWIGWLGERP
SRLGDADDVVLQEPRDRLHAR*

  Nucleotide sequence: 1026 bp    

>T6CP003512 NC_012779:2637967-2638992 [Edwardsiella ictaluri 93-146] [TssG]
ATGAGCGCCCCCCAGAACCGACAGTCCGTGCTGGAGCAGCTGTATGCCCGGCCCTATGACTTCGATTTTTTTCAGGCCGT
CAGGATACTGGAGCTGCAGCAGTTAAGGTGTGGCTGCCAGGAGCTTCCGCTGCGCTTCCGTACCCATCTCTCCCTGGCTA
CCCCGGCCAGCAGTATTTATGCGCTGCAGCCCCCCGTAGCAGATCAGCCGCAGGTCATGACCATCAACTTCATGGGACTG
ACCGGCCCCTCTGGGGCATTACCGACACGGTATACCGAGATGCTGCTGGAGCGACGCCTGCAGCATCGGGATCAGACCGC
TCACCATTTTTTTGATCTGCTCAACCACCGTCTGATCACTCTGTTTTACCAGGCGTGGCGCAAACATCAGGCGACGGCTG
ATCTGGCCTGTGGCCTGCAGGCCGATTGGCGTCAGATGCTGCTCTCCCTGGCCGGTCTGGGCACGCCGGGACTACAAAAC
CGGCTGATAAAAGATGGTGTCAATGATGATGTCTTTGCCTATTACGCCGGGCGGTTCGGCGCACGCTCGCTCAGCGAGGA
GGGACTGCGCACACTGCTGACAGAGTATTTTTCCGTACCGGTTGAGATCCAGCCCTTTCAGGGACAGTGGCTGAAGCTGG
ATGAGTCGGATGTCCTGGCTCTGGGGCGTCAGAACTGCACTCTGGGAGAGTGGCCGGTACTGGGCCGGCAGGTATGGGAT
GCCCAAAGCCAGTTTAGGATCCGCCTCGGGCCGATGAACTATAAGCAGTTTCAGGCATTTTTACCGGGGGGAAAGGACTT
TCGGGCACTGACCAAGTTGGTCCGTTTTTCCATTGAAATCGCCGTAACGTTCGATATTCAGCTGGTACTGGACGCCCGTG
AGGTACCGCCCTGCACACTGGGTGATAGCCAGGCCGGAGCGGCCCGCCCCGGATGGATTGGCTGGCTGGGAGAGCGCCCC
TCCAGACTGGGCGATGCCGACGACGTGGTATTACAGGAGCCGAGGGACAGGCTGCACGCGCGATAA