Detailed information of component protein


Summary

Component ID T6CP003511
Component protein type TssK
T6SS ID (Type) T6SS00345 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) KP1_RS15790
Coordinate (Strand) 3213532..3214872 (-)
NCBI ID WP_015874925.1
RefSeq NC_012731
Uniprot ID A0A652PYZ3_9ENTR, A0A378EG45_KLEPR, A0A0E1H2N5_KLEPN, A0A3F3B1G2_KLEPN, R4YFM8_KLEPR
KEGG ID kpx:PMK1_04630, kpv:KPNIH29_16320, kpr:KPR_3184
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.2e-132 18..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MKIFRPLWRDGAFLVPQQFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFADGTLIDTELADILPPVRDVSDVMQDSVEVLLALPLLSASGGNLDDGQESARPRRWRAEQVTVQELAGHERSELAVLRHALTLRLSTEENAAFLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARRRRLMAMRRESNARMADFAVADVSLFWLLNALNSAEPVLSELHQDPSRHPELLYRELARLAGSLLTFSLEHHLEAIPRYRHASPEQVFPPLFALLDTLLEVSLPSRVIAIALEQGADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPLRLENQYFALDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9874 - -


  Protein sequence: 447 a.a.    

>T6CP003511 NC_012731:c3214872-3213532 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssK]
MKIFRPLWRDGAFLVPQQFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFADGTLIDTELAD
ILPPVRDVSDVMQDSVEVLLALPLLSASGGNLDDGQESARPRRWRAEQVTVQELAGHERSELAVLRHALTLRLSTEENAA
FLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARRRRLMAMRRESNARMADFAVADVSLFWLLN
ALNSAEPVLSELHQDPSRHPELLYRELARLAGSLLTFSLEHHLEAIPRYRHASPEQVFPPLFALLDTLLEVSLPSRVIAI
ALEQGADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPL
RLENQYFALDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAVLRS*

  Nucleotide sequence: 1341 bp    

>T6CP003511 NC_012731:c3214872-3213532 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssK]
ATGAAGATTTTCCGCCCATTATGGCGCGACGGGGCTTTTCTGGTCCCGCAGCAGTTTCAGCAACAGGCCCGCTGGGACGC
GCACGTCGCCGATACGGTCTCCCGCATGGCTCTCGCCCACCCGTGGGGGGTATTGCGCGCGGAGTTTGACGCGAGCGCGC
TCACCCTTTCCCGGCTCAACGCTACCCGGCTGATCGTGCGTTTCGCCGACGGAACGCTGATTGACACCGAGCTGGCGGAT
ATTTTGCCACCGGTCCGCGATGTATCGGACGTGATGCAGGACAGCGTGGAGGTTCTGCTCGCTCTGCCGCTGCTCAGCGC
CAGCGGCGGCAATCTTGATGACGGCCAGGAGAGCGCCCGCCCGCGCCGCTGGCGCGCCGAGCAGGTGACCGTCCAGGAGC
TGGCCGGCCATGAACGCAGCGAGCTGGCCGTTCTGCGGCACGCGCTAACGCTGCGTCTCTCCACCGAGGAAAATGCAGCC
TTTCTCACCTGCCCGGTAGCGCGTCTGGTGCGCGACGCCCAGGGGCAGTGGATCGTTGACCCGGAATTCATCCCGCCGCT
GCTGTCGCTGGCGGCAAGCCCGACGCTGGTCAGCGAGCTGGGCGAGCTGTTACATCGCCTGCAGGCCCGACGCAGACGCC
TGATGGCCATGCGTCGTGAAAGCAATGCGCGGATGGCTGATTTTGCCGTGGCGGATGTTTCCCTGTTCTGGCTGCTCAAC
GCGCTGAACAGCGCTGAACCGGTGCTCAGCGAGCTGCATCAGGACCCTTCGCGCCATCCGGAGCTGCTCTATCGCGAACT
GGCCAGGCTGGCCGGCAGTCTGCTGACTTTCTCCCTTGAACATCATCTGGAAGCAATCCCCCGCTACCGGCATGCCTCGC
CAGAGCAGGTATTCCCGCCGCTGTTTGCCCTGCTGGATACGCTGCTCGAAGTCAGCCTGCCCTCAAGGGTGATCGCCATC
GCTCTGGAGCAGGGCGCCGACCGGGAGATCTGGCGGGGCAGGCTGCACGATGCGCGGCTGCGCGAGGGGGCGGATTTTTA
TCTGTCGGTGCGCTCTTCACTCCCCCCTCACCAGCTACAGAGCCGCTTTCCGCAGCTCTGTAAGGCGGGTAGCCATGATG
ATGTCGCCGAGGTCGTCAATATTGCCCTCAGCGGCATCGCGATCAAACCGCTGAGCCATGTGCCGGCGGCCATTCCGCTA
CGTCTGGAAAACCAATATTTCGCTCTGGATCTCTCCACCGACGCCGCCCGCGCGATGCTGGAGGCCGGCAACTGCACCTT
CTATACCCCGGAATCGCTTGGCGACGTGAAACTTGAACTCTTTGCGGTACTGCGCTCATGA