Detailed information of component protein


Summary

Component ID T6CP003506
Component protein type TssJ
T6SS ID (Type) T6SS00345 experimental (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (179 a.a.); Nucleotide sequence (537 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) KP1_RS15700
Coordinate (Strand) 3192317..3192853 (-)
NCBI ID WP_004175532.1
RefSeq NC_012731
Uniprot ID UPI0001576BE4
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1e-32 47..167

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-178 MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFKEK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9977 pos: 23-24. LTG-CG. MAITAVKPSARLLAFLMVTVLTG



  Protein sequence: 179 a.a.    

>T6CP003506 NC_012731:c3192853-3192317 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssJ]
MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR
QAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARP
RIIEASQNQLTLHPFKEK*

  Nucleotide sequence: 537 bp    

>T6CP003506 NC_012731:c3192853-3192317 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssJ]
ATGGCGATTACCGCAGTTAAACCCTCCGCCAGGTTGCTGGCATTCCTCATGGTTACCGTCTTAACCGGCTGCGGACTGAC
GCAGACCGTGAAAGACGGTGCCGTTTCCGTGACCCAGTCCATTTTTTACCCCCAGGTGAAAACCCTGCATCTGGATCTTC
GCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGACGGTGGTGCGTATTTATCAGCTGAAGGACCGG
CAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGCCAGGCGCTGCAGGCGGACCGGGTGGCGGAAAA
AGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCATGGAAACCAGCGCGCAGTTTGTGGCGGTGGCGG
CCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTACTCACCCGGGACGAACTTGATCCGGCGAGGCCG
CGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAGGAGAAGTGA