Detailed information of component protein
Summary
External database links
Locus tag (Gene) | KP1_RS15700 |
Coordinate (Strand) | 3192317..3192853 (-) |
NCBI ID | WP_004175532.1 |
RefSeq | NC_012731 |
Uniprot ID | UPI0001576BE4 |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS-SciN | PF12790.9 | 1e-32 | 47..167 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-178 | MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFKEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
LIPO(Sec/SPII) | 0.9977 | pos: 23-24. LTG-CG. | MAITAVKPSARLLAFLMVTVLTG |
Protein sequence: 179 a.a.
>T6CP003506 NC_012731:c3192853-3192317 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssJ]
MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR
QAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARP
RIIEASQNQLTLHPFKEK*
MAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR
QAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARP
RIIEASQNQLTLHPFKEK*
Nucleotide sequence: 537 bp
>T6CP003506 NC_012731:c3192853-3192317 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssJ]
ATGGCGATTACCGCAGTTAAACCCTCCGCCAGGTTGCTGGCATTCCTCATGGTTACCGTCTTAACCGGCTGCGGACTGAC
GCAGACCGTGAAAGACGGTGCCGTTTCCGTGACCCAGTCCATTTTTTACCCCCAGGTGAAAACCCTGCATCTGGATCTTC
GCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGACGGTGGTGCGTATTTATCAGCTGAAGGACCGG
CAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGCCAGGCGCTGCAGGCGGACCGGGTGGCGGAAAA
AGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCATGGAAACCAGCGCGCAGTTTGTGGCGGTGGCGG
CCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTACTCACCCGGGACGAACTTGATCCGGCGAGGCCG
CGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAGGAGAAGTGA
ATGGCGATTACCGCAGTTAAACCCTCCGCCAGGTTGCTGGCATTCCTCATGGTTACCGTCTTAACCGGCTGCGGACTGAC
GCAGACCGTGAAAGACGGTGCCGTTTCCGTGACCCAGTCCATTTTTTACCCCCAGGTGAAAACCCTGCATCTGGATCTTC
GCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGACGGTGGTGCGTATTTATCAGCTGAAGGACCGG
CAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGCCAGGCGCTGCAGGCGGACCGGGTGGCGGAAAA
AGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCATGGAAACCAGCGCGCAGTTTGTGGCGGTGGCGG
CCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTACTCACCCGGGACGAACTTGATCCGGCGAGGCCG
CGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAGGAGAAGTGA