Detailed information of component protein


Summary

Component ID T6CP003503
Component protein type TssF
T6SS ID (Type) T6SS00344 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (585 a.a.); Nucleotide sequence (1755 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) KP1_RS11315
Coordinate (Strand) 2325154..2326908 (+)
NCBI ID WP_004190505.1
RefSeq NC_012731
Uniprot ID A0A7U9D199_KLEPN, A0A652Q188_9ENTR, A0A332MEQ9_KLEPN, A0A3F3B5U4_KLEPN
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.2e-178 1..581
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-584 MDDLTLRYYDAEMRYLLEAGEEFARAHPEQAAMLNLDKAGARDPFVERLFEGFAFLMGRMREKLDDDLPELTEGVVSLLWPHYLRTIPSMSVVEFTPDWPEMKEPMTMAKGFEVLSRPIGEKGTRCRYTTTKAIALQPLSLERVQLATDTDGRSVITLRFTCSQLTDWRRVDLSHIPLYCNADAPLACAMHEAFTLNVARMWLRMPDEVDRRPLDGYFSALGFGEDDGLWPEDGRSFRGYQLLLEYFTFREKFMFIDLRGLETVVFPAGLAWFEIDVVLAERWEHDFRFSEKQLRLHCVPVINLFPLESDPLTINSLQTEYPLRPMRVQDGHTEIYTVDSVISSHQQVYAPFSSFRHKGGMMRHDAADYYYHTRVRRGPSGLYNTWLIVGGEAFDNHTVPEDESLSLTLTGTNGQLPRRALQSTVLDTVMKTTSASIAVRNLCAPTLPCYPPAQDRFHWRVLSHLGSSFLSLMDNAEVLRGTLALYEWTDSEMNRRRLEAILDVKHRATERFAQGHLVRGVQIEVTLDSHGFAGRGDICLFGEMLSRFFALYTDIYLFNRLIIILQPTGERLEWEEKHSRRIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9977 - -


  Protein sequence: 585 a.a.    

>T6CP003503 NC_012731:2325154-2326908 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssF]
MDDLTLRYYDAEMRYLLEAGEEFARAHPEQAAMLNLDKAGARDPFVERLFEGFAFLMGRMREKLDDDLPELTEGVVSLLW
PHYLRTIPSMSVVEFTPDWPEMKEPMTMAKGFEVLSRPIGEKGTRCRYTTTKAIALQPLSLERVQLATDTDGRSVITLRF
TCSQLTDWRRVDLSHIPLYCNADAPLACAMHEAFTLNVARMWLRMPDEVDRRPLDGYFSALGFGEDDGLWPEDGRSFRGY
QLLLEYFTFREKFMFIDLRGLETVVFPAGLAWFEIDVVLAERWEHDFRFSEKQLRLHCVPVINLFPLESDPLTINSLQTE
YPLRPMRVQDGHTEIYTVDSVISSHQQVYAPFSSFRHKGGMMRHDAADYYYHTRVRRGPSGLYNTWLIVGGEAFDNHTVP
EDESLSLTLTGTNGQLPRRALQSTVLDTVMKTTSASIAVRNLCAPTLPCYPPAQDRFHWRVLSHLGSSFLSLMDNAEVLR
GTLALYEWTDSEMNRRRLEAILDVKHRATERFAQGHLVRGVQIEVTLDSHGFAGRGDICLFGEMLSRFFALYTDIYLFNR
LIIILQPTGERLEWEEKHSRRIPG*

  Nucleotide sequence: 1755 bp    

>T6CP003503 NC_012731:2325154-2326908 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssF]
ATGGACGATTTAACCCTGCGTTATTACGACGCTGAAATGCGCTACCTGCTGGAAGCGGGTGAAGAGTTTGCCCGCGCTCA
TCCTGAGCAGGCGGCAATGCTCAATCTCGACAAAGCGGGCGCTCGCGACCCCTTTGTCGAGCGTCTGTTTGAAGGTTTTG
CCTTCCTGATGGGCCGCATGCGCGAGAAACTCGATGACGATCTGCCTGAGCTGACCGAAGGCGTGGTCAGTCTGCTGTGG
CCACATTATTTACGTACCATTCCCTCGATGTCGGTCGTGGAGTTCACCCCCGACTGGCCGGAAATGAAAGAGCCGATGAC
GATGGCCAAAGGCTTTGAAGTGCTTTCCCGGCCGATCGGTGAAAAGGGCACGCGCTGCCGGTACACCACCACCAAAGCGA
TCGCTCTGCAGCCGTTATCCCTGGAGCGCGTCCAGCTGGCCACCGATACGGATGGCCGGTCGGTGATCACGCTGCGCTTT
ACCTGCAGCCAGCTGACGGACTGGCGCCGGGTCGATCTCAGTCATATCCCGCTGTACTGCAACGCCGATGCGCCGCTGGC
CTGCGCCATGCACGAGGCCTTTACCCTCAATGTGGCCCGGATGTGGCTGCGCATGCCCGATGAGGTGGACAGAAGGCCGC
TGGACGGGTATTTCAGCGCGCTTGGATTTGGCGAGGATGACGGCCTCTGGCCTGAAGATGGCCGCAGTTTTCGCGGTTAC
CAGCTGCTGCTGGAGTATTTTACCTTCCGCGAAAAGTTCATGTTCATCGATCTGCGCGGGCTGGAGACGGTGGTTTTTCC
GGCCGGACTGGCGTGGTTTGAAATCGACGTCGTGCTGGCGGAACGCTGGGAACATGACTTCCGCTTCAGCGAAAAGCAGC
TGCGCCTGCACTGCGTGCCAGTGATCAACCTGTTTCCGCTGGAGTCCGATCCGCTGACCATCAATTCCCTGCAGACCGAA
TACCCGCTGCGCCCGATGCGCGTGCAGGACGGCCACACCGAAATTTACACCGTCGATTCCGTGATCTCCTCACACCAGCA
GGTTTACGCGCCGTTCTCAAGTTTTCGCCACAAAGGCGGCATGATGCGTCATGACGCGGCGGACTATTACTATCATACCC
GGGTGCGCCGTGGCCCCTCCGGGCTGTACAACACCTGGCTTATCGTCGGCGGAGAAGCCTTTGATAATCATACCGTACCG
GAAGATGAAAGCCTGTCGCTGACCCTCACCGGAACCAACGGCCAGCTGCCGCGTCGCGCGCTGCAGAGCACCGTGCTCGA
TACGGTGATGAAAACCACTTCCGCCAGTATTGCAGTGCGTAACCTCTGCGCGCCGACGCTGCCGTGCTATCCCCCCGCCC
AGGACCGTTTTCACTGGCGGGTGCTGAGCCATCTGGGCAGCAGTTTTCTTTCCCTGATGGATAACGCGGAGGTCCTGCGC
GGCACCCTGGCGCTGTATGAATGGACCGACAGCGAGATGAATCGTCGGCGTCTGGAAGCCATCCTCGACGTGAAGCACCG
CGCAACAGAGCGCTTTGCACAGGGCCATCTGGTGCGCGGCGTACAGATTGAAGTCACCCTCGACAGTCACGGCTTTGCCG
GACGAGGCGATATATGCCTGTTTGGCGAGATGCTTAGCCGCTTCTTCGCGCTCTACACCGACATCTACTTGTTCAACCGC
CTGATTATCATTCTGCAACCAACCGGAGAACGACTGGAATGGGAAGAGAAGCACAGCCGCCGCATTCCCGGCTGA