Detailed information of component protein


Summary

Component ID T6CP003499
Component protein type TssK
T6SS ID (Type) T6SS00344 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) KP1_RS11230
Coordinate (Strand) 2300948..2302291 (+)
NCBI ID WP_004224345.1
RefSeq NC_012731
Uniprot ID UPI00027CD92F
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5.5e-136 19..444
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-447 MMKTERPLWGRGIMVSPQHFQQQAAYAAWTAEVIARMGLNHPWGVVEATFEPEMLKLGRLQAHRLQVRFQDGTMIDTDNADALPSALSLDGASGEAVIVLALPLMQANGGNCLKPEEVAERPVRFRQRWRDVRNQFGDDTRQIAVIQPELILRFAHQDNSDYLTCPLVRLQRDSQGAWLIDETFLPPLLQIQGSRWLATQLEQLLVQLRARLTRLMAMRRESNERMADFAVADVSLFWLLNALNSAEPVLGYFLRYRQSPPERLYPELARLAGSLLTFSLTHQANAVPIYQHDQLNAVFPPLFDLLSDLLEASLPSRVVAIALEHDVRLHFWQARLHDARLREGADYYLSVRSSVPVAQLQEQFPRQCKVGSPDHVKAIVNSSRTGVPLTPLRHVPAAIPLRLENQYFSLDVSHPLATEMLQSGTCMFYVPGMLGEPELELFAVLRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9605 - -


  Protein sequence: 448 a.a.    

>T6CP003499 NC_012731:2300948-2302291 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssK]
MMKTERPLWGRGIMVSPQHFQQQAAYAAWTAEVIARMGLNHPWGVVEATFEPEMLKLGRLQAHRLQVRFQDGTMIDTDNA
DALPSALSLDGASGEAVIVLALPLMQANGGNCLKPEEVAERPVRFRQRWRDVRNQFGDDTRQIAVIQPELILRFAHQDNS
DYLTCPLVRLQRDSQGAWLIDETFLPPLLQIQGSRWLATQLEQLLVQLRARLTRLMAMRRESNERMADFAVADVSLFWLL
NALNSAEPVLGYFLRYRQSPPERLYPELARLAGSLLTFSLTHQANAVPIYQHDQLNAVFPPLFDLLSDLLEASLPSRVVA
IALEHDVRLHFWQARLHDARLREGADYYLSVRSSVPVAQLQEQFPRQCKVGSPDHVKAIVNSSRTGVPLTPLRHVPAAIP
LRLENQYFSLDVSHPLATEMLQSGTCMFYVPGMLGEPELELFAVLRT*

  Nucleotide sequence: 1344 bp    

>T6CP003499 NC_012731:2300948-2302291 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssK]
ATGATGAAAACGGAACGTCCGTTGTGGGGCCGGGGCATTATGGTGTCGCCTCAGCATTTTCAACAGCAGGCTGCGTATGC
AGCCTGGACTGCGGAAGTGATTGCCCGGATGGGTCTTAACCACCCCTGGGGAGTGGTTGAGGCGACCTTCGAACCAGAGA
TGCTCAAACTGGGCCGCCTGCAGGCTCACAGGCTGCAGGTCCGGTTCCAGGATGGCACGATGATTGATACGGACAATGCC
GATGCGCTGCCGTCCGCGCTGTCGCTGGACGGCGCGTCCGGCGAGGCGGTGATCGTGCTGGCGCTGCCCCTGATGCAGGC
GAATGGCGGCAACTGTCTGAAGCCGGAGGAGGTGGCCGAAAGGCCGGTGCGCTTCCGCCAGCGCTGGCGCGATGTCCGCA
ACCAGTTTGGGGATGATACCCGGCAGATTGCCGTCATACAGCCGGAGCTGATCCTCCGCTTCGCCCACCAGGACAACAGC
GATTACCTGACCTGTCCGCTTGTTCGCCTGCAGCGGGACTCGCAGGGGGCCTGGCTTATCGACGAGACGTTTCTCCCGCC
GCTGCTGCAGATCCAGGGCAGCCGCTGGCTGGCGACGCAGCTTGAACAGCTGCTCGTCCAGCTCCGGGCTCGTCTGACGC
GCCTGATGGCCATGCGTCGCGAAAGCAATGAACGGATGGCTGATTTTGCCGTGGCTGATGTCTCTCTGTTCTGGTTGCTG
AATGCGCTGAACAGCGCCGAGCCGGTGCTGGGGTACTTTCTGCGTTACCGGCAAAGCCCGCCGGAACGCCTCTACCCGGA
GCTGGCGCGCCTGGCTGGTAGCCTGCTGACCTTTTCGCTCACCCATCAGGCGAATGCCGTCCCGATCTATCAGCATGACC
AGCTGAACGCGGTTTTTCCGCCGCTGTTTGATTTACTGAGCGACCTGCTGGAGGCGAGCCTGCCATCGCGGGTGGTGGCG
ATTGCGCTGGAGCATGATGTCCGGCTGCACTTCTGGCAGGCGCGTCTGCACGATGCCCGGCTGCGGGAAGGGGCTGATTA
CTACCTGTCGGTTCGTTCGTCGGTACCGGTCGCCCAACTGCAGGAGCAGTTTCCGCGCCAGTGCAAAGTGGGCAGTCCGG
ATCATGTCAAAGCCATCGTCAACTCCTCGCGGACAGGGGTGCCCCTCACGCCATTGCGTCATGTGCCGGCGGCGATCCCG
CTGCGTCTGGAAAATCAGTATTTCAGCCTCGATGTGTCCCACCCTCTGGCAACGGAAATGCTGCAGAGCGGCACCTGTAT
GTTTTACGTCCCGGGGATGCTCGGTGAGCCTGAACTTGAACTTTTTGCGGTACTACGAACGTGA