SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP003498
Component protein type	TssC
T6SS ID (Type)	T6SS00344 (Type i2)
Strain	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon	chromosome
Sequence	Protein sequence (515 a.a.); Nucleotide sequence (1545 bp)
Reference	[1] Sarris PF, Zoumadakis C, Panopoulos NJ, et al. Distribution of the putative type VI secretion system core genes in Klebsiella spp. Infect Genet Evol. 2011 Jan;11(1):157-66. doi: 10.1016/j.meegid.2010.09.006. Epub 2010 Oct 4. PMID: 20932940 [2] Hsieh PF, Lu YR, Lin TL, et al. Klebsiella pneumoniae Type VI Secretion System Contributes to Bacterial Competition, Cell Invasion, Type-1 Fimbriae Expression, and In Vivo Colonization. J Infect Dis. 2019 Jan 29;219(4):637-647. doi: 10.1093/infdis/jiy534. PMID: 30202982

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	KP1_RS11225
Coordinate (Strand)	2299394..2300938 (+)
NCBI ID	WP_014907727.1
RefSeq	NC_012731
Uniprot ID	A0A652Q1B6_9ENTR, A0A374M577_KLEPN, A0A3F3BYL5_KLEPN
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
VipB	PF05943.14	8.6e-119	89..389
VipB_2	PF18945.2	2.1e-39	399..509

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-514	MSVTTENAPVQGQTTLQENSAGEGVYASLFEKINLTPASRLGDINDFLDDAALSEAPAAERLTAAMQVFMERIRQSGQRVEKLDKTLIDHHIAELDFQISRQLDAVMHHQEFQQVESLWRGLKQLVDNTDYRQNVKTEILDVAKDDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISRVSAAAHMPFIGAVGPAFFLKETMEEVAAIKDIGNYFDRAEYIRWKAFRETDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSAAFSFASNMVKSFVNNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFASLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKMIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDASVVVEDIEDNPGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9856	-	-

Protein sequence: 515 a.a.

						>T6CP003498 NC_012731:2299394-2300938 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssC]
MSVTTENAPVQGQTTLQENSAGEGVYASLFEKINLTPASRLGDINDFLDDAALSEAPAAERLTAAMQVFMERIRQSGQRV
EKLDKTLIDHHIAELDFQISRQLDAVMHHQEFQQVESLWRGLKQLVDNTDYRQNVKTEILDVAKDDLRQDFEDAPELIQS
GLYWHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISRVSAAAHMPFIGAVGPAFFLKETMEEVAAIKDIGNYFD
RAEYIRWKAFRETDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSAAFSFASNMVKSFVNNGWCV
QIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFASLGFIPLSYYKNRDYACFFSANSAQKPALYDTADAT
ANSRINARLPYIFLLSRIAHYLKMIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDASVVVEDIEDN
PGFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA*					

Nucleotide sequence: 1545 bp

						>T6CP003498 NC_012731:2299394-2300938 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssC]
ATGTCTGTTACCACAGAAAACGCCCCTGTTCAGGGGCAAACCACGCTGCAGGAAAACAGCGCGGGCGAGGGCGTTTACGC
CTCGCTGTTTGAAAAAATTAATCTCACCCCGGCGTCTCGCCTCGGGGATATCAACGACTTTCTGGACGATGCCGCGCTCT
CCGAGGCGCCGGCGGCGGAACGTCTCACCGCGGCGATGCAGGTGTTTATGGAACGCATCCGTCAGTCCGGCCAGCGGGTG
GAAAAGCTCGACAAAACGCTGATCGACCACCATATCGCCGAGCTGGATTTCCAGATAAGCCGTCAGCTGGACGCGGTGAT
GCACCATCAGGAGTTTCAGCAGGTCGAATCCCTGTGGCGCGGCCTCAAACAGCTGGTGGACAACACCGACTATCGGCAGA
ACGTCAAAACGGAGATCCTCGACGTCGCCAAAGACGATCTGCGCCAGGACTTTGAGGACGCGCCGGAGCTTATCCAGAGC
GGCCTCTACTGGCACACCTATACCGCGGAGTATGACACTCCCGGCGGCGAGCCGATCGGCTCGGTGATCTCGGCCTATGA
GTTCGACGCCAGCCCGCAGGATGTGGCGCTGCTGCGCAATATCTCCCGCGTCTCTGCGGCCGCCCATATGCCGTTTATCG
GCGCCGTCGGCCCGGCCTTCTTCCTGAAAGAGACCATGGAAGAGGTGGCTGCCATTAAGGATATCGGCAACTACTTCGAT
CGTGCGGAATATATCCGCTGGAAGGCGTTTCGCGAAACTGACGATGCCCGCTACATCGGTCTGGTGATGCCGCGCGTGCT
GGGTCGTCTGCCGTACGGTCCGGACACCGTGCCGGTGCGCAGCTTCAACTATGTCGAGCAGGTGAAGGGCCCGGACCACG
AAAAGTATCTCTGGACCAGCGCGGCGTTCTCCTTCGCTTCCAATATGGTGAAGAGCTTTGTCAATAACGGCTGGTGCGTG
CAAATTCGCGGTCCGCAGGCCGGCGGCGCGGTGAAAGATCTGCCCATCCATCTGTACGATCTGGGCACCGGCAACCAGGT
GAAAATTCCTTCCGAGGTGATGATCCCGGAAACGCGGGAGTTTGAGTTCGCCAGCCTGGGCTTTATCCCGCTGTCGTACT
ACAAAAATCGCGATTACGCCTGCTTCTTCTCGGCCAACTCCGCGCAGAAACCGGCGCTGTACGATACCGCCGACGCCACC
GCCAACAGCCGTATCAACGCGCGTCTGCCTTATATCTTCCTGCTGTCGCGCATCGCGCACTACCTGAAGATGATCCAGCG
CGAGAATATCGGCACCACCAAGGACCGGCGTCTGCTGGAGCTGGAGCTGAACACCTGGGTGCGGAGCCTGGTGACCGAAA
TGACCGACCCCGGCGACGAGCTGCAGGCCTCCCATCCGCTGCGCGATGCCAGCGTGGTGGTGGAAGATATCGAGGATAAC
CCGGGCTTCTTCCGCGTGAAGCTGTACGCGGTGCCGCACTTCCAGGTCGAGGGGATGGACGTCAATCTGTCGCTGGTTAG
CCAGATGCCAAAGGCGAAGGCGTAG					