Detailed information of component protein


Summary

Component ID T6CP003497
Component protein type TssB
T6SS ID (Type) T6SS00344 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) KP1_RS11220
Coordinate (Strand) 2298860..2299351 (+)
NCBI ID WP_004176434.1
RefSeq NC_012731
Uniprot ID V0AWZ6_KLEPN, W1HNJ0_KLEPN, A0A264BV44_KLEVA, A0A652Q1X6_9ENTR, A0A6I4LTW9_9ENTR, A6T833_KLEP7, A0A3S4N0Z0_KLEAE, A0A4V0GXU9_KLEPN, A0A1Y0Q113_KLEPN
KEGG ID kpn:KPN_01322, kpk:A593_21445, kpv:KPNIH29_11375, kpt:VK055_1107, kvq:SP68_00325, kpx:PMK1_03720, kpy:KPNIH31_11025
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2.1e-52 7..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-163 MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHGKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPNTLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSALAPK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -



  Protein sequence: 164 a.a.    

>T6CP003497 NC_012731:2298860-2299351 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssB]
MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHGKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPN
TLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSAL
APK*

  Nucleotide sequence: 492 bp    

>T6CP003497 NC_012731:2298860-2299351 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] [TssB]
ATGGCTGATACGTTCCAGAATGAAGTCCCCAGGGCGCGCATTAATCTCAAATTATCTCTTCATACCGGCGGCGCGCAAAA
GAAGGTCGAACTGCCGCTCAAACTGCTTACCATTGGCGATTTTAGTCATGGTAAGGAAAACCGGCCTTTATCGGAAAGAG
AAAAAATCAACGTCAATAAAAATAATTTTAACAGCGTACTTTCGGAATTTAGCCCGGAAGTTAACCTCTCGGTGCCGAAT
ACGCTGGCCGGCAATGGCGAAGAGGAGAACGTCAGACTGCGTTTTACCGACATCAAAGATTTTGAACCGGAGCAGGTTGC
CCGGCAAATTCCGCAACTCCGCGCCATGCTGGCGATGCGTAATTTATTACGCGATCTCAAATCCAATCTGCTCGATAACG
CCACTTTCAGAAAAGAGCTTGAGGCAATCCTGAAAGATCCGGCGCTGTCCCAGGAATTACGCGACGAAATGAGTGCGCTT
GCCCCGAAATAA