Detailed information of component protein


Summary

Component ID T6CP003496
Component protein type TssM
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (1292 a.a.); Nucleotide sequence (3876 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS01995
Coordinate (Strand) 413562..417437 (-)
NCBI ID WP_012734489.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 3.8e-96 496..848
IcmF-related_N PF14331.8 3.1e-81 192..447
IcmF_C PF06744.14 1.2e-22 1117..1220
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MQRILNVLTHPR
Transmembrane helix 13-30 TLSILGFIALAAILFIVA
Outside 31-34 DALQ
Transmembrane helix 35-57 ISFVWPIAILAALVVLWLLVKLV
Inside 58-443 RRLRVKRANRKLGDMLEEQASVESPAAAAAPVEPAKQAELDTLRTRLVDTVKTIKSSKIGQVSGGSALYELPWYIVIGNPAAGKSSAVINSGLQFPFADKNSAVIHGIGGTRNCDWFFTTEGILLDTAGRYSVHEEDRSEWLGFLGLLKKHRPKAPINGIIVTASIAELTGNRPEFAINLAKNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSNSDRAEYDRVWGATLPYEPDEKRDVVALFDERFEELYDGLKEISVAQLAISRGNILSPGQLSFPLEFASIKPTLRAFLATLFENNPFQYKPIFRGFYFTSALQEGETNSAAAQRIAARFALDGTALPKPPSAFSKNGFFLRDLFSKVIFEDRKTVRQFASPAKTRMR
Transmembrane helix 444-466 YATFFAFVAALALALGGWTWSTI
Outside 467-1291 GNQQLVANVQADLDNIAKLEQNRNDLQSRLQAMDILEDRIEQLEQFRHDKPIAVSLGLYQGDRLEEHLLTEYYNGVRQIMLAPVADNLAAFLKDVNAHPDQLAPMTRAPESGAVPVSDKTALASRAQGGLYNDASPTNVEDAYNALKTYLMLSDKRHVEQAHLTDQIARFWRGWLETNRGNMPRDEMIRSAERMITFYLSRVQDNDWPMIDANLALIDQTRENLRRVVRGMPARQRVYEEIKARASTRYAPMTVARIVGDENASLVAGSYAIPGTFTRDAWFDYVQPAIRDAATKELQAKDWVLNTASQDDLTLEGSPEQIQKVLVGMYKTEYAQHWQKFMQGIAVQNFGSFGQAVDAMNRLGDPQDSPIRKILETAYEQTSWDNPSLASVTLKKAQTGVVGWVKQWFSRQRGGQLAANIDINGNPVEVPMGPIGQEFIGLARIVQTHDGGQSMLKGYMESLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGNGSELADSLKYVDELMLTGLTDSQRRSLRPLLVRPLMQAFAVVIQPASVEVNKVWNAQVYQPFQSSLANKYPFSPGAKVEAAASEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLTARTWGDMGLALTPEFTNGFASWVAPLAGGAATSSASSEPQTVFQILPQPSSGTTEYTIAIDGQQLRYRNTPPQWTNFVWPNPSGSPGATLSATTFDGRTLQLVNEPGRYGLEKLINSAQRTRRPDGTFDLTWTQGGVSVSVTMRIISTSQPSGGGSGGDAPQQQSLRGMHLPSSVANTSASGAINATAQAPAATSGVSPAAAATGAAANASNAQGAQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -


  Protein sequence: 1292 a.a.    

>T6CP003496 NC_012724:c417437-413562 [Burkholderia glumae BGR1] [TssM]
MQRILNVLTHPRTLSILGFIALAAILFIVADALQISFVWPIAILAALVVLWLLVKLVRRLRVKRANRKLGDMLEEQASVE
SPAAAAAPVEPAKQAELDTLRTRLVDTVKTIKSSKIGQVSGGSALYELPWYIVIGNPAAGKSSAVINSGLQFPFADKNSA
VIHGIGGTRNCDWFFTTEGILLDTAGRYSVHEEDRSEWLGFLGLLKKHRPKAPINGIIVTASIAELTGNRPEFAINLAKN
LRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSNSDRAEYDRVWGATLPYEPDEKRDVVALFDERFEELYDGLKEIS
VAQLAISRGNILSPGQLSFPLEFASIKPTLRAFLATLFENNPFQYKPIFRGFYFTSALQEGETNSAAAQRIAARFALDGT
ALPKPPSAFSKNGFFLRDLFSKVIFEDRKTVRQFASPAKTRMRYATFFAFVAALALALGGWTWSTIGNQQLVANVQADLD
NIAKLEQNRNDLQSRLQAMDILEDRIEQLEQFRHDKPIAVSLGLYQGDRLEEHLLTEYYNGVRQIMLAPVADNLAAFLKD
VNAHPDQLAPMTRAPESGAVPVSDKTALASRAQGGLYNDASPTNVEDAYNALKTYLMLSDKRHVEQAHLTDQIARFWRGW
LETNRGNMPRDEMIRSAERMITFYLSRVQDNDWPMIDANLALIDQTRENLRRVVRGMPARQRVYEEIKARASTRYAPMTV
ARIVGDENASLVAGSYAIPGTFTRDAWFDYVQPAIRDAATKELQAKDWVLNTASQDDLTLEGSPEQIQKVLVGMYKTEYA
QHWQKFMQGIAVQNFGSFGQAVDAMNRLGDPQDSPIRKILETAYEQTSWDNPSLASVTLKKAQTGVVGWVKQWFSRQRGG
QLAANIDINGNPVEVPMGPIGQEFIGLARIVQTHDGGQSMLKGYMESLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGNG
SELADSLKYVDELMLTGLTDSQRRSLRPLLVRPLMQAFAVVIQPASVEVNKVWNAQVYQPFQSSLANKYPFSPGAKVEAA
ASEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLTARTWGDMGLALTPEFTNGFASWVAPLAGGAATSSASSEPQTVFQIL
PQPSSGTTEYTIAIDGQQLRYRNTPPQWTNFVWPNPSGSPGATLSATTFDGRTLQLVNEPGRYGLEKLINSAQRTRRPDG
TFDLTWTQGGVSVSVTMRIISTSQPSGGGSGGDAPQQQSLRGMHLPSSVANTSASGAINATAQAPAATSGVSPAAAATGA
AANASNAQGAQ*

  Nucleotide sequence: 3876 bp    

>T6CP003496 NC_012724:c417437-413562 [Burkholderia glumae BGR1] [TssM]
ATGCAACGCATCCTCAACGTGTTGACTCACCCGCGCACGCTCTCGATCCTCGGGTTCATCGCGCTCGCCGCGATCCTGTT
CATCGTGGCGGACGCCCTGCAGATCAGCTTCGTCTGGCCGATCGCGATCCTCGCCGCGCTCGTCGTGCTGTGGCTGCTCG
TGAAGCTGGTGCGGCGGCTGCGGGTGAAGCGCGCGAACCGCAAGCTCGGCGACATGCTCGAGGAACAGGCCTCGGTCGAG
AGCCCGGCCGCCGCCGCCGCGCCGGTCGAGCCGGCCAAGCAGGCCGAGCTGGACACGCTGCGCACGCGCCTCGTCGATAC
GGTCAAGACCATCAAGAGCTCGAAGATCGGCCAGGTCTCGGGCGGCTCGGCGCTCTACGAGCTGCCGTGGTACATCGTGA
TCGGCAACCCGGCGGCGGGCAAGAGCAGCGCGGTGATCAACTCGGGCCTGCAGTTCCCGTTCGCCGACAAGAACAGCGCC
GTGATCCACGGCATCGGCGGCACCCGCAACTGCGACTGGTTCTTCACCACCGAGGGCATCCTGCTCGACACCGCGGGCCG
CTATTCGGTGCACGAGGAGGACCGCAGCGAATGGCTCGGCTTCCTCGGCCTGCTCAAGAAGCACCGCCCGAAGGCGCCGA
TCAACGGCATCATCGTCACGGCCAGCATCGCCGAGCTGACCGGCAACCGCCCCGAATTCGCCATCAACCTCGCCAAGAAC
CTGCGCCAGCGCGTGCAGGAGCTGACCGAGAAGCTCGAGGTGTTCGCGCCGGTCTACGTGATGTTCACCAAGGCCGACCT
GATCACCGGCTTCACCGAGTTCTTCAGCAACAGCGACCGCGCCGAGTACGACCGCGTGTGGGGCGCCACGCTGCCCTACG
AGCCCGACGAGAAGCGCGACGTGGTGGCGCTCTTCGACGAGCGCTTCGAGGAGCTCTACGACGGCCTCAAGGAGATCAGC
GTCGCGCAGCTCGCGATCAGCCGCGGCAACATCCTCTCGCCGGGCCAGCTGAGCTTCCCGCTCGAATTCGCCTCGATCAA
GCCCACCCTGCGCGCGTTCCTCGCCACGCTGTTCGAGAACAACCCGTTCCAGTACAAGCCGATCTTCCGCGGCTTCTACT
TCACCAGCGCGCTGCAGGAAGGCGAGACCAACAGCGCCGCCGCGCAGCGCATCGCGGCGCGCTTCGCGCTCGACGGCACC
GCGCTGCCCAAGCCGCCCAGCGCGTTCTCGAAGAACGGCTTCTTCCTGCGCGACCTGTTCTCGAAGGTGATCTTCGAGGA
CCGCAAGACGGTGCGCCAGTTCGCGAGCCCCGCCAAGACGCGGATGCGCTACGCGACCTTCTTCGCGTTCGTCGCCGCGC
TCGCGCTCGCGCTGGGCGGCTGGACCTGGTCGACGATCGGCAACCAGCAGCTGGTGGCCAACGTGCAGGCCGACCTCGAC
AACATCGCCAAGCTCGAGCAGAACCGCAACGACCTGCAGTCGCGCCTGCAGGCGATGGACATCCTCGAGGACCGCATCGA
GCAGCTCGAGCAGTTCCGCCACGACAAGCCGATCGCGGTCTCGCTCGGGCTCTACCAGGGCGACCGGCTCGAGGAGCACC
TGCTGACCGAGTACTACAACGGCGTGCGCCAGATCATGCTCGCGCCGGTGGCCGACAACCTCGCCGCGTTCCTGAAGGAC
GTGAACGCGCATCCGGACCAGCTCGCGCCGATGACGCGCGCGCCCGAATCGGGCGCGGTGCCGGTCTCGGACAAGACCGC
GCTGGCCAGCCGCGCGCAGGGCGGGCTCTACAACGACGCCTCGCCCACCAATGTCGAGGACGCCTACAACGCACTGAAGA
CCTACCTGATGCTGTCCGACAAGCGGCACGTCGAGCAGGCCCACCTGACCGACCAGATCGCGCGCTTCTGGCGCGGCTGG
CTGGAAACCAACCGCGGCAACATGCCTCGTGACGAGATGATCCGCAGCGCCGAGCGGATGATCACGTTCTATCTCTCGCG
CGTGCAGGACAACGACTGGCCGATGATCGACGCGAACCTCGCGCTCATCGACCAGACCCGCGAGAACCTGCGCCGCGTGG
TGCGCGGCATGCCGGCCCGCCAGCGCGTCTACGAGGAAATCAAGGCGCGCGCCTCGACGCGCTACGCGCCGATGACCGTC
GCGCGCATCGTCGGCGACGAGAACGCCTCGCTGGTGGCGGGCAGCTACGCGATCCCCGGCACCTTCACGCGCGACGCCTG
GTTCGACTACGTGCAGCCGGCGATCCGCGACGCGGCCACCAAGGAGCTGCAGGCCAAGGACTGGGTGCTCAACACCGCCT
CGCAGGACGACCTGACGCTGGAAGGCAGCCCCGAGCAGATCCAGAAGGTGCTGGTGGGCATGTACAAGACCGAGTACGCG
CAGCACTGGCAGAAGTTCATGCAGGGCATCGCGGTGCAGAACTTCGGCAGCTTCGGGCAGGCCGTCGATGCGATGAACCG
GCTCGGCGACCCGCAGGATTCGCCGATCCGCAAGATCCTCGAGACCGCCTACGAGCAGACCTCGTGGGACAACCCCTCGC
TGGCCAGCGTGACGCTGAAGAAGGCGCAGACGGGCGTGGTGGGCTGGGTCAAGCAGTGGTTCTCGCGCCAGCGCGGCGGC
CAGCTCGCGGCCAACATCGACATCAACGGCAATCCGGTGGAGGTGCCGATGGGGCCGATCGGCCAGGAGTTCATCGGGCT
CGCCCGGATCGTGCAGACCCACGACGGCGGCCAGTCGATGCTGAAGGGCTACATGGAGTCGCTCTCGAAGGTGCGCACGC
GCTTCAACGTGATCAAGAACCAGGGCGACCCCGGCCCCGGCGCGCGCCAGCTGATGCAGCAGACGCTCGACGGCAACGGC
TCCGAGCTGGCCGATTCGCTGAAGTACGTGGACGAGCTGATGCTGACCGGCCTGACCGACTCGCAGCGCCGCTCGCTGCG
GCCGCTGCTGGTGCGTCCGCTGATGCAGGCGTTCGCGGTGGTGATCCAGCCGGCCTCGGTGGAAGTCAACAAGGTCTGGA
ACGCGCAGGTCTACCAGCCGTTCCAGTCGTCGCTGGCCAACAAGTATCCGTTCTCGCCGGGCGCCAAGGTCGAGGCCGCC
GCCTCCGAGATCGCCCAGGTGTTCGGCCCGGACGGCTCGATCGCGAAGTTCGTCGGCACCACGCTCGGCCCGCTCGCGGT
GCGCCGCGGCGACACGCTGACCGCGCGCACCTGGGGCGACATGGGCCTGGCGCTGACGCCGGAGTTCACCAACGGCTTCG
CGAGCTGGGTCGCGCCGCTGGCGGGCGGCGCCGCCACCAGCTCGGCCTCGTCCGAGCCGCAGACGGTGTTCCAGATCCTG
CCGCAGCCGAGCAGCGGCACGACCGAGTACACCATCGCGATCGACGGCCAGCAGCTGCGCTACCGCAACACGCCGCCGCA
GTGGACCAACTTCGTCTGGCCGAATCCGTCGGGCTCGCCGGGCGCCACGCTGTCGGCGACCACCTTCGACGGCCGCACGC
TGCAGCTCGTCAACGAGCCGGGCCGCTACGGGCTGGAGAAGCTGATCAACTCGGCGCAGCGCACGCGCCGCCCGGACGGC
ACCTTCGACCTGACGTGGACGCAGGGCGGCGTGAGCGTGTCGGTGACGATGCGCATCATCAGCACCTCGCAGCCGTCGGG
CGGCGGCAGCGGCGGCGACGCCCCGCAGCAGCAGAGCCTGCGCGGCATGCACCTGCCCTCGTCGGTGGCCAACACCAGCG
CGAGCGGCGCCATCAACGCGACGGCACAGGCGCCGGCCGCCACGTCCGGCGTGAGCCCGGCCGCGGCCGCCACGGGCGCG
GCTGCCAACGCATCGAACGCACAGGGGGCGCAATGA