Detailed information of component protein
Summary
| Component ID | T6CP003496 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00343  (Type i4b) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome I |
| Sequence | Protein sequence (1292 a.a.); Nucleotide sequence (3876 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 413562..417437 (-) |
| NCBI ID | WP_012734489.1 |
| RefSeq | NC_012724 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | MQRILNVLTHPR |
| Transmembrane helix | 13-30 | TLSILGFIALAAILFIVA |
| Outside | 31-34 | DALQ |
| Transmembrane helix | 35-57 | ISFVWPIAILAALVVLWLLVKLV |
| Inside | 58-443 | RRLRVKRANRKLGDMLEEQASVESPAAAAAPVEPAKQAELDTLRTRLVDTVKTIKSSKIGQVSGGSALYELPWYIVIGNPAAGKSSAVINSGLQFPFADKNSAVIHGIGGTRNCDWFFTTEGILLDTAGRYSVHEEDRSEWLGFLGLLKKHRPKAPINGIIVTASIAELTGNRPEFAINLAKNLRQRVQELTEKLEVFAPVYVMFTKADLITGFTEFFSNSDRAEYDRVWGATLPYEPDEKRDVVALFDERFEELYDGLKEISVAQLAISRGNILSPGQLSFPLEFASIKPTLRAFLATLFENNPFQYKPIFRGFYFTSALQEGETNSAAAQRIAARFALDGTALPKPPSAFSKNGFFLRDLFSKVIFEDRKTVRQFASPAKTRMR |
| Transmembrane helix | 444-466 | YATFFAFVAALALALGGWTWSTI |
| Outside | 467-1291 | GNQQLVANVQADLDNIAKLEQNRNDLQSRLQAMDILEDRIEQLEQFRHDKPIAVSLGLYQGDRLEEHLLTEYYNGVRQIMLAPVADNLAAFLKDVNAHPDQLAPMTRAPESGAVPVSDKTALASRAQGGLYNDASPTNVEDAYNALKTYLMLSDKRHVEQAHLTDQIARFWRGWLETNRGNMPRDEMIRSAERMITFYLSRVQDNDWPMIDANLALIDQTRENLRRVVRGMPARQRVYEEIKARASTRYAPMTVARIVGDENASLVAGSYAIPGTFTRDAWFDYVQPAIRDAATKELQAKDWVLNTASQDDLTLEGSPEQIQKVLVGMYKTEYAQHWQKFMQGIAVQNFGSFGQAVDAMNRLGDPQDSPIRKILETAYEQTSWDNPSLASVTLKKAQTGVVGWVKQWFSRQRGGQLAANIDINGNPVEVPMGPIGQEFIGLARIVQTHDGGQSMLKGYMESLSKVRTRFNVIKNQGDPGPGARQLMQQTLDGNGSELADSLKYVDELMLTGLTDSQRRSLRPLLVRPLMQAFAVVIQPASVEVNKVWNAQVYQPFQSSLANKYPFSPGAKVEAAASEIAQVFGPDGSIAKFVGTTLGPLAVRRGDTLTARTWGDMGLALTPEFTNGFASWVAPLAGGAATSSASSEPQTVFQILPQPSSGTTEYTIAIDGQQLRYRNTPPQWTNFVWPNPSGSPGATLSATTFDGRTLQLVNEPGRYGLEKLINSAQRTRRPDGTFDLTWTQGGVSVSVTMRIISTSQPSGGGSGGDAPQQQSLRGMHLPSSVANTSASGAINATAQAPAATSGVSPAAAATGAAANASNAQGAQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9965 | - | - |
Protein sequence: 1292 a.a.
Nucleotide sequence: 3876 bp