Detailed information of component protein


Summary

Component ID T6CP003495
Component protein type TssA
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (381 a.a.); Nucleotide sequence (1143 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS01980
Coordinate (Strand) 410265..411407 (+)
NCBI ID WP_012734486.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.2e-34 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-380 MPIHVNALLAPLSEASPCGDDLLFSSEFDAIQHARKFDDPSLDQGEWVTEIKEADWGFVVDQSVALLGTRTKDLRLAVWLTEGLGIQEGVAGLTQGYELLAGLCRTWWDAVHPLPEGDDLDYRLGNVGWLSGRTAELLRMVPLTDGSGSAYSALDWEVAQHVAQAVRRDPDNAGEIARNKPTVEQIEASKRMTSVAFYAGLLANLSAFRAALDALDDELERRAGNAAPSFRQAREAYDSVRMLAERFAKEQGYAPDAQPVAPPPPVVQGGPAERSEPSFKTPFTPEPHPPMPTAQPVAVHVPAPTVIAGIHNRAQAVEQLRAVAKYFRATEPHSPVAYLADKAAEWADMPLHLWLESVVKDDGSLAHLRELLGVKRDDNA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8322 - -


  Protein sequence: 381 a.a.    

>T6CP003495 NC_012724:410265-411407 [Burkholderia glumae BGR1] [TssA]
MPIHVNALLAPLSEASPCGDDLLFSSEFDAIQHARKFDDPSLDQGEWVTEIKEADWGFVVDQSVALLGTRTKDLRLAVWL
TEGLGIQEGVAGLTQGYELLAGLCRTWWDAVHPLPEGDDLDYRLGNVGWLSGRTAELLRMVPLTDGSGSAYSALDWEVAQ
HVAQAVRRDPDNAGEIARNKPTVEQIEASKRMTSVAFYAGLLANLSAFRAALDALDDELERRAGNAAPSFRQAREAYDSV
RMLAERFAKEQGYAPDAQPVAPPPPVVQGGPAERSEPSFKTPFTPEPHPPMPTAQPVAVHVPAPTVIAGIHNRAQAVEQL
RAVAKYFRATEPHSPVAYLADKAAEWADMPLHLWLESVVKDDGSLAHLRELLGVKRDDNA*

  Nucleotide sequence: 1143 bp    

>T6CP003495 NC_012724:410265-411407 [Burkholderia glumae BGR1] [TssA]
ATGCCGATTCACGTCAATGCGCTGCTCGCGCCCCTGAGCGAAGCCTCGCCCTGCGGCGACGACCTGCTGTTCTCGTCCGA
GTTCGACGCCATCCAGCACGCGCGCAAGTTCGACGATCCCTCGCTCGATCAGGGCGAATGGGTCACCGAGATCAAGGAGG
CCGACTGGGGCTTCGTGGTGGACCAGTCGGTCGCGCTGCTCGGCACCCGCACCAAGGACCTGCGGCTCGCTGTCTGGCTC
ACCGAGGGGCTGGGCATCCAGGAGGGCGTGGCCGGGCTCACCCAGGGCTACGAACTGCTGGCCGGGCTGTGCCGCACCTG
GTGGGACGCCGTGCATCCGCTGCCGGAGGGCGACGACCTCGATTACCGGCTCGGCAACGTCGGCTGGCTGTCGGGCCGCA
CCGCCGAGCTGCTGCGCATGGTGCCGCTCACCGACGGCTCGGGCAGCGCCTACAGCGCGCTCGACTGGGAGGTGGCGCAG
CATGTTGCGCAGGCGGTGCGGCGCGACCCCGACAACGCCGGCGAGATCGCGCGCAACAAGCCCACCGTCGAACAGATCGA
GGCCTCGAAGCGGATGACCTCGGTGGCGTTCTACGCCGGCCTGCTGGCCAACCTGAGCGCGTTCCGCGCGGCGCTCGACG
CGCTCGACGACGAACTCGAACGGCGCGCCGGCAACGCCGCGCCGAGCTTCCGGCAGGCACGCGAGGCCTATGACTCGGTG
CGCATGCTGGCCGAGCGCTTCGCCAAGGAGCAGGGCTATGCGCCCGACGCGCAGCCCGTCGCGCCGCCGCCGCCCGTCGT
GCAGGGCGGCCCCGCCGAGCGCAGCGAACCGAGTTTCAAGACCCCGTTTACGCCCGAACCGCACCCGCCGATGCCCACCG
CCCAGCCCGTCGCCGTCCACGTCCCCGCGCCGACCGTGATCGCCGGCATCCATAACCGCGCGCAGGCGGTCGAGCAGCTG
CGTGCCGTGGCCAAGTACTTCCGCGCCACCGAGCCGCACAGCCCGGTCGCCTATCTGGCCGACAAGGCGGCCGAATGGGC
CGACATGCCGCTGCACCTGTGGCTCGAATCGGTGGTGAAGGACGATGGCTCGCTCGCGCATCTGCGCGAGCTGCTCGGCG
TGAAGCGCGACGACAACGCTTGA