Detailed information of component protein


Summary

Component ID T6CP003494
Component protein type TssH
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (890 a.a.); Nucleotide sequence (2670 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS01975
Coordinate (Strand) 407505..410174 (+)
NCBI ID WP_012734485.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.7e-42 619..787
AAA_lid_9 PF17871.3 5e-28 374..463
ClpB_D2-small PF10431.11 3.4e-10 794..868
Clp_N PF02861.22 1.8e-09 23..74
AAA PF00004.31 8.4e-09 232..344
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-889 MSTPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRRDLERELDTLKSGNTRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAEPRGAEAGHDGAPEAAALAGAAGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVGKTAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPHPIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAITEAVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARDADLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALKAVQGGEPMVPLQVDAHVVAEIVAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALDAVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALALADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGVMDDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDDVLAEIIELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASEAGEFEYTVK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -


  Protein sequence: 890 a.a.    

>T6CP003494 NC_012724:407505-410174 [Burkholderia glumae BGR1] [TssH]
MSTPLKTLIAKLNPTCRKAAERAASQCLARGHYEVDLEHLFVALLDETSGDMPVVLRASGVDPHALRRDLERELDTLKSG
NTRTPVFSVHLSELFQQAWLIASLDAQIGRIRSGHLLLALLSAPDLAQFAQRMSPQFAQVRVTDLKHKFDEITAGSHEAE
PRGAEAGHDGAPEAAALAGAAGGPSKTPALDTYTTNLTQRARDGKIDPVIGRDAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAAADVPPPLAGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKQSPHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKIEEPSEPLAAAMLRGMAALMERHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAQSATPAAIDDLKKRLERTAAEIAALEREVAGGAAHDERLAALGAARD
ADLAALAAAEARYAEEQAIVAEIVALRAQIDASREASADGERIDADAVRAQLAERVAALKAVQGGEPMVPLQVDAHVVAE
IVAAWTGIPLGRMVKDEIETVMNLKALLGARVIGQDHALDAVAQRVRTATAGLEDPNKPRGVFLFVGPSGVGKTETALAL
ADVLYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEIEKAHPDVLEMFFQVFDKGV
MDDAEGREIDFRNTLIILTSNVGSSAVMQACLNQPAEALPDPDALAETLRPALYKAFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIARRIEANHKARFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLERLAEGSAIERIAVRASE
AGEFEYTVK*

  Nucleotide sequence: 2670 bp    

>T6CP003494 NC_012724:407505-410174 [Burkholderia glumae BGR1] [TssH]
ATGAGCACGCCCCTCAAAACCCTGATTGCCAAACTGAATCCCACCTGCCGCAAGGCGGCCGAACGCGCGGCCAGCCAGTG
CCTCGCGCGCGGCCACTACGAGGTCGATCTCGAGCACCTGTTCGTGGCGCTGCTCGACGAGACCTCGGGCGACATGCCGG
TGGTGCTGCGCGCGAGCGGCGTCGATCCGCACGCGCTGCGCCGCGACCTCGAGCGCGAGCTCGACACGCTCAAGAGCGGC
AACACGCGCACGCCGGTGTTCTCGGTGCATCTGAGCGAGCTGTTCCAGCAGGCCTGGCTGATTGCCTCGCTCGATGCGCA
GATCGGCCGGATCCGTTCCGGGCACCTGCTGCTCGCGCTGCTGAGCGCGCCGGACCTCGCGCAGTTCGCGCAGCGCATGT
CGCCGCAGTTCGCGCAGGTGCGCGTGACCGATCTGAAGCACAAGTTCGACGAGATCACGGCCGGCTCCCACGAGGCCGAG
CCGCGCGGCGCCGAGGCCGGGCACGACGGCGCGCCCGAGGCCGCCGCGCTGGCCGGTGCCGCGGGCGGCCCGTCGAAGAC
GCCCGCGCTCGACACCTACACCACCAACCTCACGCAGCGCGCGCGCGACGGCAAGATCGATCCGGTGATCGGCCGCGACG
CCGAGATCCGCCAGGCGATCGACATCCTGATGCGGCGCCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGCGTCGGG
AAGACCGCCGTGGTGGAAGGGCTGGCGCTGCGGATCGCCGCGGCCGACGTGCCGCCGCCGCTCGCGGGCGTGGCGCTGCA
CGTGCTCGACATGGGGCTGCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGCCTGAAGAGCGTGATCGACG
AGGTCAAGCAGAGCCCGCATCCGATCATCCTGTTCATCGACGAGGCGCACACCATCATCGGCGCCGGCGGCCAGGCCGGC
CAGAACGACGCGGCCAACCTGCTCAAGCCGGCGCTCGCGCGCGGCGAGCTGCGCACCATCGCGGCCACCACCTGGAGCGA
GTACAAGAAATACTTCGAGAAGGATGCGGCGCTCGCGCGGCGCTTCCAGGTGGTCAAGATCGAGGAGCCGAGCGAGCCGC
TGGCCGCCGCGATGCTGCGCGGCATGGCCGCGCTGATGGAGCGCCACTTCAACGTGCGGATTCTCGACGACGCGATCACC
GAGGCGGTGCGCCTGTCGCATCGCTACATCAGCGGCCGGCAGCTGCCGGACAAGGCGATCAGCGTGCTCGATACGGCCTG
CGCGAAGGTCGCGCTGGCGCAGAGCGCGACGCCGGCGGCCATCGACGACCTGAAGAAGCGCCTGGAGCGCACCGCCGCCG
AGATCGCCGCGCTCGAGCGCGAGGTGGCGGGCGGGGCCGCGCACGACGAGCGCCTCGCCGCGCTCGGCGCGGCGCGCGAC
GCCGATCTGGCCGCGCTGGCGGCGGCCGAGGCGCGCTATGCCGAGGAGCAGGCGATCGTCGCCGAGATCGTCGCGCTGCG
CGCGCAGATCGATGCCTCGCGCGAGGCATCGGCCGACGGCGAGCGGATCGACGCCGACGCGGTGCGCGCCCAGCTGGCCG
AGCGCGTGGCCGCGCTGAAGGCGGTGCAGGGCGGCGAGCCGATGGTGCCGCTGCAGGTGGACGCGCACGTGGTGGCCGAG
ATCGTCGCCGCGTGGACCGGCATCCCGCTCGGCCGCATGGTCAAGGACGAGATCGAGACCGTGATGAACCTGAAGGCGCT
GCTCGGCGCGCGCGTGATCGGTCAGGACCACGCGCTCGACGCGGTGGCGCAGCGCGTGCGCACCGCGACCGCCGGCCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCCTGTTCGTCGGGCCGTCGGGCGTCGGCAAGACCGAGACCGCGCTCGCGCTG
GCCGACGTGCTGTACGGCGGCGAGCGCAAGATGGTCACCATCAACATGAGCGAGTACCAGGAGGCGCACAGCGTGTCGGG
CCTGAAGGGCTCGCCGCCGGGCTACGTCGGCTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGGCGCAACCCGTATT
CGGTGGTGCTGCTCGACGAGATCGAGAAGGCGCACCCGGACGTGCTCGAGATGTTCTTCCAGGTGTTCGACAAGGGCGTG
ATGGACGATGCCGAGGGCCGCGAGATCGACTTCCGCAACACGCTGATCATCCTGACCTCGAACGTCGGCTCGTCGGCGGT
GATGCAGGCCTGCCTGAACCAGCCCGCCGAGGCGCTGCCCGATCCCGACGCGCTGGCCGAGACGCTGCGCCCGGCGCTCT
ACAAGGCGTTCAAGCCGGCCTTCCTCGGCCGCATGAAGGTGGTGCCGTATTATCCGATCTCGGACGACGTGCTGGCCGAG
ATCATCGAGCTGAAGCTCGAGCGGATCGCGCGGCGCATCGAGGCGAACCACAAGGCCCGCTTCGAGTGGGACGAGTCGCT
GGTGGACGCCGTGCTGGCGCGCTGCACCGAGGTGGATTCGGGCGCGCGCAACGTCGATCACATCCTGAACGGCACGCTGC
TGCCCGAGATCGCCGGCCATGTGCTCGAACGGCTCGCCGAGGGCAGCGCGATCGAGCGCATCGCCGTGCGCGCGAGCGAG
GCGGGCGAGTTCGAGTACACCGTCAAGTAA