Detailed information of component protein
Summary
| Component ID | T6CP003491 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00343  (Type i4b) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome I |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BGLU_RS01960 |
| Coordinate (Strand) | 403965..404447 (+) |
| NCBI ID | WP_012734482.1 |
| RefSeq | NC_012724 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 4.6e-21 | 32..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MKRFEPSFLDKLFDDEPHLPASPAMRQLSLDELKNTVARDVESILNTRIALTDEDLAALPQCQQSVLTYGLNDFAGLSLASHYDRAFICKSIQQAIDRHEPRLRQVAVSFELNEQSTNSLNFVIRGLLVVHPAQEPVSFDAMLQPSTLQYSVTRGRAAKT |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9850 | - | - |
Protein sequence: 161 a.a.
>T6CP003491 NC_012724:403965-404447 [Burkholderia glumae BGR1] [TssE]
MKRFEPSFLDKLFDDEPHLPASPAMRQLSLDELKNTVARDVESILNTRIALTDEDLAALPQCQQSVLTYGLNDFAGLSLA
SHYDRAFICKSIQQAIDRHEPRLRQVAVSFELNEQSTNSLNFVIRGLLVVHPAQEPVSFDAMLQPSTLQYSVTRGRAAKT
*
MKRFEPSFLDKLFDDEPHLPASPAMRQLSLDELKNTVARDVESILNTRIALTDEDLAALPQCQQSVLTYGLNDFAGLSLA
SHYDRAFICKSIQQAIDRHEPRLRQVAVSFELNEQSTNSLNFVIRGLLVVHPAQEPVSFDAMLQPSTLQYSVTRGRAAKT
*
Nucleotide sequence: 483 bp
>T6CP003491 NC_012724:403965-404447 [Burkholderia glumae BGR1] [TssE]
ATGAAACGTTTCGAGCCGAGTTTCCTCGACAAGCTGTTCGACGACGAACCGCATCTGCCGGCCTCGCCAGCGATGCGGCA
GTTGTCGTTGGACGAACTGAAGAACACCGTGGCCCGTGACGTCGAATCGATCCTGAACACGCGCATCGCGCTGACGGACG
AAGACCTCGCGGCGCTGCCGCAGTGCCAGCAGTCGGTGCTGACCTATGGACTCAACGACTTCGCGGGCCTGAGCCTGGCG
AGTCACTACGACCGCGCGTTCATCTGCAAGTCGATCCAGCAGGCGATCGACCGGCACGAGCCGCGCTTGCGCCAGGTGGC
GGTATCGTTCGAACTCAACGAGCAATCGACCAACTCGTTGAACTTCGTGATCCGGGGGCTGCTGGTCGTGCATCCGGCGC
AGGAGCCCGTCAGTTTCGACGCGATGCTGCAGCCGTCCACCCTGCAGTATTCGGTGACGCGCGGCCGCGCCGCCAAGACA
TAA
ATGAAACGTTTCGAGCCGAGTTTCCTCGACAAGCTGTTCGACGACGAACCGCATCTGCCGGCCTCGCCAGCGATGCGGCA
GTTGTCGTTGGACGAACTGAAGAACACCGTGGCCCGTGACGTCGAATCGATCCTGAACACGCGCATCGCGCTGACGGACG
AAGACCTCGCGGCGCTGCCGCAGTGCCAGCAGTCGGTGCTGACCTATGGACTCAACGACTTCGCGGGCCTGAGCCTGGCG
AGTCACTACGACCGCGCGTTCATCTGCAAGTCGATCCAGCAGGCGATCGACCGGCACGAGCCGCGCTTGCGCCAGGTGGC
GGTATCGTTCGAACTCAACGAGCAATCGACCAACTCGTTGAACTTCGTGATCCGGGGGCTGCTGGTCGTGCATCCGGCGC
AGGAGCCCGTCAGTTTCGACGCGATGCTGCAGCCGTCCACCCTGCAGTATTCGGTGACGCGCGGCCGCGCCGCCAAGACA
TAA