Detailed information of component protein


Summary

Component ID T6CP003489
Component protein type TssC
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS01950
Coordinate (Strand) 401817..403307 (+)
NCBI ID WP_012734480.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 9.3e-136 68..370
VipB_2 PF18945.2 1.5e-46 380..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MNQQTAAAQQSGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISAQMSAVMHAPEFQRLESTWRGLDYLVSESNTGSTIKIKAMHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGALIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGLTLPRFLGRLPFHPKDGQIAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVAEIPGKPGSYRSVAFLRPHFQLDELSISLRLVADLPKSANS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9862 - -


  Protein sequence: 497 a.a.    

>T6CP003489 NC_012724:401817-403307 [Burkholderia glumae BGR1] [TssC]
MNQQTAAAQQSGALEGAETSLLDEIVEKSKVAKSQSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISA
QMSAVMHAPEFQRLESTWRGLDYLVSESNTGSTIKIKAMHAPKRELVRDFKAATEFDQSALFKKVYEEEFGTFGGAPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASAAPELIGLESFADLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFHPKDGQIAESFNFVEDVDGTDHSKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYNTDSANANAVLSAQLQYIFSVSRIA
HYLKAMMRDKIGSFASAQNVESFLNRWISQYVLLDDNATQEQKAQFPLREASVQVAEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKSANS*

  Nucleotide sequence: 1491 bp    

>T6CP003489 NC_012724:401817-403307 [Burkholderia glumae BGR1] [TssC]
ATGAACCAGCAAACGGCTGCGGCCCAGCAGTCCGGTGCCCTCGAAGGCGCCGAAACATCGCTTCTCGACGAGATCGTCGA
GAAGAGCAAGGTCGCCAAATCGCAGTCCGAGCACGCACGTGCGAAGGACCTGATCGGCGAACTCGTGCATCAGGTGCTCG
ACGGCACCGTGATCGTCTCGGACAATCTGTCGGCCACCATCGACGCGCGCGTGGCCGAGCTCGACCGGCTGATCTCGGCG
CAGATGAGCGCGGTGATGCACGCGCCCGAATTCCAGCGCCTCGAAAGCACCTGGCGCGGCCTCGACTATCTGGTCTCGGA
GAGCAACACCGGCTCGACCATCAAGATCAAGGCGATGCACGCGCCCAAGCGCGAGCTGGTGCGCGACTTCAAGGCCGCCA
CCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAGGAAGAGTTCGGCACCTTCGGCGGCGCGCCGTTCGGCGCG
CTGATCGGCGACTACGAGATCTCGCGCCAGCCCGAGGACATGTACTTCATCGAGCAGATGTCGCACGTGGCGGCCGCCGC
GCACGCGCCGTTCATCGCCTCGGCCGCGCCCGAGCTGATCGGCCTCGAGTCGTTCGCCGACCTCGGCAAGCCGCGCGATC
TCGGCAAGGTGTTCGACACCGTCGAATACGCGAAGTGGAAATCGTTCCGCGACTCGGAGGATTCGCGCTACGTCGGCCTC
ACGCTGCCGCGTTTCCTCGGCCGCCTGCCGTTCCATCCCAAGGACGGCCAGATCGCCGAGAGCTTCAATTTCGTCGAGGA
CGTCGACGGCACCGATCATTCGAAATATCTGTGGTGCAACGCCGCCTGGGCGTTCGCGGCGCGCCTGACCGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTGGAGGGCGGCGGCCTGGTCGAGGATCTGCCCACCCATACCTTCAAG
ACCGACGACGGCGAGATCGCGCTGAAGTGCCCCACCGAGATCGCGATCACCGACCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTCCATTGCAAGAACTCCGACTACGCTGCCTTCTTCGCCGCCCAGTCGGTGCAGAAGCCCAAGA
AATACAACACCGACAGCGCGAACGCGAACGCGGTGCTGTCCGCTCAGCTCCAGTACATCTTCTCGGTATCGCGCATCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCCTCCGCGCAGAACGTGGAATCTTTCCTGAATCGCTG
GATCTCCCAGTACGTGCTGCTGGACGACAACGCGACGCAGGAACAGAAAGCGCAGTTTCCGCTGCGCGAAGCTTCGGTCC
AGGTGGCCGAGATTCCGGGCAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGGCCGCACTTCCAGCTCGACGAACTC
TCGATCTCGCTGCGCCTGGTCGCGGATCTGCCCAAGTCGGCAAATTCATGA