Detailed information of component protein
Summary
| Component ID | T6CP003488 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00343  (Type i4b) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome I |
| Sequence | Protein sequence (180 a.a.); Nucleotide sequence (540 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BGLU_RS01945 |
| Coordinate (Strand) | 401263..401802 (+) |
| NCBI ID | WP_012734479.1 |
| RefSeq | NC_012724 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.4e-60 | 12..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-179 | MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEVKELPFVVGVVGDLAGQSEVEMPKLRDRKFVNIDRDNFDDVMKAIEPRAAYQVENKLSEDGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKMAGNDKLEDLLSEVLSNTQQLEALAKQSGEADGKPDDGKNSGE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9963 | - | - |
Protein sequence: 180 a.a.
>T6CP003488 NC_012724:401263-401802 [Burkholderia glumae BGR1] [TssB]
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEVKELPFVVGVVGDLAGQSEVEMPKLRDRKFVNIDRDNFDDVMKAIEPR
AAYQVENKLSEDGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKMAGNDKLEDLLSEVLSNTQQLEAL
AKQSGEADGKPDDGKNSGE*
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEVKELPFVVGVVGDLAGQSEVEMPKLRDRKFVNIDRDNFDDVMKAIEPR
AAYQVENKLSEDGGKFAVDLKFRSLDDFDPDQVVNQIEPLRRLIEARSKLADLRNKMAGNDKLEDLLSEVLSNTQQLEAL
AKQSGEADGKPDDGKNSGE*
Nucleotide sequence: 540 bp
>T6CP003488 NC_012724:401263-401802 [Burkholderia glumae BGR1] [TssB]
ATGGCAAAAAAAGAAAGTATCCAGAAACGCCTGCAAAAGGTGCGGCCGCCCCGCGTGCAGCTCACCTACGAGGTCGAGCG
CGGCGATGCGATCGAGGTGAAGGAACTGCCGTTCGTGGTCGGCGTGGTCGGCGACCTGGCCGGGCAGTCCGAGGTCGAGA
TGCCGAAGCTGCGTGACCGCAAGTTCGTCAACATCGATCGCGACAACTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCGGCCTACCAGGTCGAGAACAAGCTCAGCGAGGACGGCGGCAAGTTCGCGGTGGACCTGAAGTTCCGCTCGCTCGACGA
TTTCGATCCGGACCAGGTGGTCAACCAGATCGAGCCGCTGCGCCGCCTGATCGAGGCGCGCTCGAAGCTGGCCGACCTGC
GCAACAAGATGGCCGGCAACGACAAGCTCGAGGATCTCCTGAGCGAGGTGCTCAGCAACACGCAGCAGCTCGAGGCGCTC
GCCAAGCAATCGGGCGAGGCGGACGGCAAGCCGGACGACGGCAAGAACAGCGGCGAATGA
ATGGCAAAAAAAGAAAGTATCCAGAAACGCCTGCAAAAGGTGCGGCCGCCCCGCGTGCAGCTCACCTACGAGGTCGAGCG
CGGCGATGCGATCGAGGTGAAGGAACTGCCGTTCGTGGTCGGCGTGGTCGGCGACCTGGCCGGGCAGTCCGAGGTCGAGA
TGCCGAAGCTGCGTGACCGCAAGTTCGTCAACATCGATCGCGACAACTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCGGCCTACCAGGTCGAGAACAAGCTCAGCGAGGACGGCGGCAAGTTCGCGGTGGACCTGAAGTTCCGCTCGCTCGACGA
TTTCGATCCGGACCAGGTGGTCAACCAGATCGAGCCGCTGCGCCGCCTGATCGAGGCGCGCTCGAAGCTGGCCGACCTGC
GCAACAAGATGGCCGGCAACGACAAGCTCGAGGATCTCCTGAGCGAGGTGCTCAGCAACACGCAGCAGCTCGAGGCGCTC
GCCAAGCAATCGGGCGAGGCGGACGGCAAGCCGGACGACGGCAAGAACAGCGGCGAATGA