Detailed information of component protein


Summary

Component ID T6CP003486
Component protein type TssK
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS01930
Coordinate (Strand) 398140..399486 (-)
NCBI ID WP_012734476.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 8e-139 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESVQAIQPYNWGVRSVKLDRDAISSNVLRLSELSLIFPDGALYSAPQADDLPPPVALDTLPEGINEFTFYLALHPLRETGSNYVEDADGGFTSRFTSENNPISDQFTDAAEADITFLKTNVKLIAHSEPRDQLLAIPLVRVRRTATSGFEFDDTFVPPCLAIEASGILMQRLRQLIDALQAKVNALYGFHREPTKNIIEFRSGDIASFWLLHTANAAFASLAHLYQHCALHPERLFQELLRLAGQLMTFSKSYALADLPAYRHDDPGPPFARLDTMLRELLETVISTRYFAITLEEVRPSFHIGRLDSGKIDDKTEFYLAVSADMASVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPAIPVRPGACYFALDARSPLYERMLQSQSAMIYAPSGINDLKFELIAVTS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -


  Protein sequence: 449 a.a.    

>T6CP003486 NC_012724:c399486-398140 [Burkholderia glumae BGR1] [TssK]
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESVQAIQPYNWGVRSVKLDRDAISSNVLRLSELSLIFPDGALYSAPQA
DDLPPPVALDTLPEGINEFTFYLALHPLRETGSNYVEDADGGFTSRFTSENNPISDQFTDAAEADITFLKTNVKLIAHSE
PRDQLLAIPLVRVRRTATSGFEFDDTFVPPCLAIEASGILMQRLRQLIDALQAKVNALYGFHREPTKNIIEFRSGDIASF
WLLHTANAAFASLAHLYQHCALHPERLFQELLRLAGQLMTFSKSYALADLPAYRHDDPGPPFARLDTMLRELLETVISTR
YFAITLEEVRPSFHIGRLDSGKIDDKTEFYLAVSADMASVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPA
IPVRPGACYFALDARSPLYERMLQSQSAMIYAPSGINDLKFELIAVTS*

  Nucleotide sequence: 1347 bp    

>T6CP003486 NC_012724:c399486-398140 [Burkholderia glumae BGR1] [TssK]
ATGAGTTATTCGGCCAAGGTGCTATGGGGTGAAGGCCTGTTTCTGCGGCCTCAGCACTTTCAACGTCAGGACGCCTACCA
CGAGGCACGCCTGTTCGAGTCGGTGCAGGCGATCCAGCCGTACAACTGGGGCGTGCGCTCGGTGAAGCTGGACCGCGACG
CGATCAGCAGCAACGTGCTGCGGCTCTCGGAGCTGTCGCTGATCTTCCCCGACGGCGCGCTGTATTCCGCGCCGCAGGCC
GACGACCTGCCGCCGCCCGTCGCGCTCGATACGCTGCCCGAGGGCATCAACGAGTTCACGTTCTATCTCGCACTGCATCC
GCTGCGCGAAACCGGGTCGAACTACGTGGAGGACGCCGACGGCGGCTTCACGAGCCGCTTCACGAGCGAGAACAACCCGA
TCTCCGACCAGTTCACCGACGCGGCCGAGGCCGACATCACGTTCCTCAAGACCAACGTGAAGCTGATCGCGCACAGCGAG
CCGCGCGACCAGCTGCTGGCGATTCCGCTCGTGCGCGTGCGCCGTACCGCCACCTCCGGCTTCGAGTTCGACGACACCTT
CGTGCCGCCGTGCCTGGCCATCGAGGCCTCCGGGATCCTGATGCAGCGGCTGCGCCAGCTGATCGACGCGCTGCAGGCCA
AGGTCAACGCGCTGTACGGCTTCCACCGCGAGCCGACCAAGAACATCATCGAGTTCCGCTCCGGCGACATCGCCTCGTTC
TGGCTGCTGCACACCGCCAACGCCGCGTTCGCCTCGCTCGCGCACCTGTACCAGCATTGCGCGCTGCATCCCGAGCGGCT
GTTCCAGGAGCTGCTGCGCCTGGCCGGCCAGCTGATGACGTTCTCGAAGTCCTACGCACTCGCCGACCTGCCCGCCTATC
GCCACGACGATCCCGGCCCGCCGTTCGCGCGCCTCGACACCATGCTGCGCGAGCTGCTCGAGACCGTGATCTCGACGCGC
TACTTCGCGATCACGCTCGAGGAAGTGCGGCCGTCGTTCCACATCGGCCGGCTCGACTCCGGCAAGATCGACGACAAGAC
CGAGTTCTACCTCGCCGTGTCGGCCGACATGGCGTCGGTGGAACTGGTGGACGCCGTGCCCGCGCGCTTCAAGGTCGGCG
CGCCCGACGACGTCGACAAGCTGGTGCTGTCCGCGATGCCGGGCGTGCGGCTGTCGTACACGCCGCAGGTGCCGCCCGCG
ATTCCGGTGCGCCCCGGCGCCTGCTACTTCGCGCTCGACGCGCGCAGCCCGCTCTATGAGCGCATGCTGCAGTCGCAGTC
GGCGATGATCTACGCGCCGTCGGGCATCAACGACCTCAAATTCGAACTGATCGCCGTCACATCATGA