Detailed information of component protein
Summary
| Component ID | T6CP003485 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00343  (Type i4b) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome I |
| Sequence | Protein sequence (264 a.a.); Nucleotide sequence (792 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BGLU_RS01925 |
| Coordinate (Strand) | 397352..398143 (-) |
| NCBI ID | WP_012734475.1 |
| RefSeq | NC_012724 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 4.8e-59 | 34..232 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-211 | MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNVGADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVP |
| Transmembrane helix | 212-234 | LWAIGAVFALVGLLAFIGLNTYL |
| Inside | 235-263 | RDHTLKALAPYSQIIKVGPESANLTISLP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9500 | - | - |
Protein sequence: 264 a.a.
>T6CP003485 NC_012724:c398143-397352 [Burkholderia glumae BGR1] [TssL]
MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNV
GADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQ
GKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK
ALAPYSQIIKVGPESANLTISLP*
MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNV
GADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQ
GKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK
ALAPYSQIIKVGPESANLTISLP*
Nucleotide sequence: 792 bp
>T6CP003485 NC_012724:c398143-397352 [Burkholderia glumae BGR1] [TssL]
ATGAGCTACGCGCCCTCCCTGTTCGGCGGCAACACGCCGCCGCCTTCCTCCGCCCCGCACTCGGCCTCGTCGACCGACGC
CAGCTTCCAGGCGCGTTCGCTGCTCGACCTGCTGTACGACGGCTTCTTCATGATGTTCCTGCTGAAGAACGGCCGCGAGC
CCGGCGAGGCCAACGAATTCCGCGGGCGAATCCAGGAGTTCCTCGCCGATTTCGAGCGCGGCGCGAAAAAGCTCAACGTC
GGCGCCGACGATGTGTACGCCGCCAAGTTCGCGTTCTGCGCCGCGATCGACGAGGCCGTGCTGTCGTCGCAGTTCAAGGT
GCGCGCCGAATGGGAGCAGCGGCCGCTGCAGCTCGTGCTGTTCGGCGAGCAGCTGGCCGGCGAGAAGTTCTTCCAGTATC
TCGAGGAATGCCGCGCGCGCGGCGCCGCGCGCCTGCAGTCGCTCGAGGTGTTCCACATGTGCCTGCTGCTCGGCTTCCAG
GGCAAGTACCTGCTCGAAGGGCCCGAGAAGCTCGCCTACCTGACCGCGCGGATCGGCGACGAGATCGCGCAGATGAAGGG
CAAGCGCGCGCCGTTCGCGCCACACTGGGCGCTGCCCGACCAGATCGCGCACCGCCTGAAGCGCGAGGTGCCGCTGTGGG
CCATCGGCGCCGTGTTCGCGCTGGTGGGGCTGCTCGCGTTCATCGGGCTCAATACCTACCTGCGCGACCATACGCTGAAG
GCGCTCGCGCCGTACTCGCAGATCATCAAGGTCGGACCGGAATCGGCGAACCTGACGATTTCGCTGCCTTGA
ATGAGCTACGCGCCCTCCCTGTTCGGCGGCAACACGCCGCCGCCTTCCTCCGCCCCGCACTCGGCCTCGTCGACCGACGC
CAGCTTCCAGGCGCGTTCGCTGCTCGACCTGCTGTACGACGGCTTCTTCATGATGTTCCTGCTGAAGAACGGCCGCGAGC
CCGGCGAGGCCAACGAATTCCGCGGGCGAATCCAGGAGTTCCTCGCCGATTTCGAGCGCGGCGCGAAAAAGCTCAACGTC
GGCGCCGACGATGTGTACGCCGCCAAGTTCGCGTTCTGCGCCGCGATCGACGAGGCCGTGCTGTCGTCGCAGTTCAAGGT
GCGCGCCGAATGGGAGCAGCGGCCGCTGCAGCTCGTGCTGTTCGGCGAGCAGCTGGCCGGCGAGAAGTTCTTCCAGTATC
TCGAGGAATGCCGCGCGCGCGGCGCCGCGCGCCTGCAGTCGCTCGAGGTGTTCCACATGTGCCTGCTGCTCGGCTTCCAG
GGCAAGTACCTGCTCGAAGGGCCCGAGAAGCTCGCCTACCTGACCGCGCGGATCGGCGACGAGATCGCGCAGATGAAGGG
CAAGCGCGCGCCGTTCGCGCCACACTGGGCGCTGCCCGACCAGATCGCGCACCGCCTGAAGCGCGAGGTGCCGCTGTGGG
CCATCGGCGCCGTGTTCGCGCTGGTGGGGCTGCTCGCGTTCATCGGGCTCAATACCTACCTGCGCGACCATACGCTGAAG
GCGCTCGCGCCGTACTCGCAGATCATCAAGGTCGGACCGGAATCGGCGAACCTGACGATTTCGCTGCCTTGA