Detailed information of component protein


Summary

Component ID T6CP003485
Component protein type TssL
T6SS ID (Type) T6SS00343 experimental (Type i4b)
Strain Burkholderia glumae BGR1
Replicon chromosome I
Sequence Protein sequence (264 a.a.); Nucleotide sequence (792 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BGLU_RS01925
Coordinate (Strand) 397352..398143 (-)
NCBI ID WP_012734475.1
RefSeq NC_012724
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 4.8e-59 34..232

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-211 MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNVGADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVP
Transmembrane helix 212-234 LWAIGAVFALVGLLAFIGLNTYL
Inside 235-263 RDHTLKALAPYSQIIKVGPESANLTISLP



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9500 - -



  Protein sequence: 264 a.a.    

>T6CP003485 NC_012724:c398143-397352 [Burkholderia glumae BGR1] [TssL]
MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNV
GADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQ
GKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK
ALAPYSQIIKVGPESANLTISLP*

  Nucleotide sequence: 792 bp    

>T6CP003485 NC_012724:c398143-397352 [Burkholderia glumae BGR1] [TssL]
ATGAGCTACGCGCCCTCCCTGTTCGGCGGCAACACGCCGCCGCCTTCCTCCGCCCCGCACTCGGCCTCGTCGACCGACGC
CAGCTTCCAGGCGCGTTCGCTGCTCGACCTGCTGTACGACGGCTTCTTCATGATGTTCCTGCTGAAGAACGGCCGCGAGC
CCGGCGAGGCCAACGAATTCCGCGGGCGAATCCAGGAGTTCCTCGCCGATTTCGAGCGCGGCGCGAAAAAGCTCAACGTC
GGCGCCGACGATGTGTACGCCGCCAAGTTCGCGTTCTGCGCCGCGATCGACGAGGCCGTGCTGTCGTCGCAGTTCAAGGT
GCGCGCCGAATGGGAGCAGCGGCCGCTGCAGCTCGTGCTGTTCGGCGAGCAGCTGGCCGGCGAGAAGTTCTTCCAGTATC
TCGAGGAATGCCGCGCGCGCGGCGCCGCGCGCCTGCAGTCGCTCGAGGTGTTCCACATGTGCCTGCTGCTCGGCTTCCAG
GGCAAGTACCTGCTCGAAGGGCCCGAGAAGCTCGCCTACCTGACCGCGCGGATCGGCGACGAGATCGCGCAGATGAAGGG
CAAGCGCGCGCCGTTCGCGCCACACTGGGCGCTGCCCGACCAGATCGCGCACCGCCTGAAGCGCGAGGTGCCGCTGTGGG
CCATCGGCGCCGTGTTCGCGCTGGTGGGGCTGCTCGCGTTCATCGGGCTCAATACCTACCTGCGCGACCATACGCTGAAG
GCGCTCGCGCCGTACTCGCAGATCATCAAGGTCGGACCGGAATCGGCGAACCTGACGATTTCGCTGCCTTGA