Detailed information of component protein


Summary

Component ID T6CP003162
Component protein type TssE
T6SS ID (Type) T6SS00312 experimental (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (159 a.a.); Nucleotide sequence (477 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) ABBFA_RS11045
Coordinate (Strand) 2383517..2383993 (-)
NCBI ID 446969775
RefSeq NC_011595
Uniprot ID N9KTR7_ACIBA, A0A0E1PYI2_ACIBA, A0A0J0ZYC3_ACIBA, B0VB02_ACIBY, D0C8P2_ACIB2
KEGG ID aby:ABAYE2412
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 4.7e-17 34..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-158 MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLSTANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -



  Protein sequence: 159 a.a.    

>T6CP003162 NC_011595:c2383993-2383517 [Acinetobacter baumannii AB307-0294] [TssE]
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*

  Nucleotide sequence: 477 bp    

>T6CP003162 NC_011595:c2383993-2383517 [Acinetobacter baumannii AB307-0294] [TssE]
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTGATTGATGACTATCCACTTGTAAAAAAATCGATACTTCAGTTCGGGATTATTGATTTTGTGGGGCTTTCT
ACAGCCAACCCTCTGGATCGGGATAAAATTTGCCAATCCATTGAGCAATCAATAGCAGCTCATGAACCTCGGCTAAGACA
AATACGGGTAGAGATGTTATTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CCTTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAATATGTAATTTCAGCAAGAACTTAA