Detailed information of component protein


Summary

Component ID T6CP003161
Component protein type TssF
T6SS ID (Type) T6SS00312 experimental (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (604 a.a.); Nucleotide sequence (1812 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11040
Coordinate (Strand) 2381689..2383500 (-)
NCBI ID 446490968
RefSeq NC_011595
Uniprot ID A0A0J0ZY45_ACIBA, B0VB01_ACIBY
KEGG ID aby:ABAYE2411
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6.8e-146 3..599
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-603 VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMFPQYLRHFPACSVVSFEDINKIKQLTEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNATLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQHTHHAYRLLMEYFCFPEKFSYLKLDLDFLKRIPQHVSELELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAEPQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMGYSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSLNSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFSQLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCSQNVGGKTLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 604 a.a.    

>T6CP003161 NC_011595:c2383500-2381689 [Acinetobacter baumannii AB307-0294] [TssF]
VIEELLPFYEKQLQEFGQQSREFAQKYPKIAQRLSLNQEQIDDPHIERLIQAFSLIAARIDKKLTDSYDVFTRSLFEVMF
PQYLRHFPACSVVSFEDINKIKQLTEPHLVPHHTVLKSRSFKGVQCEFNTTQDVKLLPIHLSGLDFKTTPSAHMHLNQNA
TLSLKFEIFNNAHACLTDEKLPIYLDAISNFPLQVLDSIFKKGTSFAVKYGQTIVELSKNPFELIGFAEQESLLPLDQHT
HHAYRLLMEYFCFPEKFSYLKLDLDFLKRIPQHVSELELLIHFKLNLNDQAVVRNYSELNIANFKLFTTPVINLFEKYAE
PQKIVHKQLEYPLVTDAHHPEFYQVYSILEMNMVREKTNQEESYVPVLPFFAMSHYHNDTARFFYSVNYQKLQSNFVEMG
YSIISKNLNPFSTRSDFISTKLLCSNRDLPHEALGQSNNVLNLNDSSLARRAIVLKRPTKPYKFEQGQSEQWRVISHLSL
NSLALMKGDAVSHVKELLALYNLPQSKENYLIIESIKKLEFSLTHKLVDGKPFPMFVRGVKAELQIDSSVFRGHSLYIFS
QLLSRVFNLKVQINSFVDLVVKDYSSQQELYQCSQNVGGKTLL*

  Nucleotide sequence: 1812 bp    

>T6CP003161 NC_011595:c2383500-2381689 [Acinetobacter baumannii AB307-0294] [TssF]
GTGATAGAAGAGCTTTTACCGTTTTATGAAAAACAATTACAAGAATTTGGTCAACAATCTCGGGAATTTGCCCAAAAATA
TCCAAAAATTGCTCAGCGCTTATCTTTAAATCAAGAGCAAATTGATGACCCACATATTGAACGTCTGATTCAGGCTTTTT
CGCTGATTGCTGCTCGAATTGATAAAAAACTAACAGACAGTTACGATGTTTTTACTCGTTCTTTATTTGAGGTGATGTTC
CCTCAATACTTACGACATTTTCCTGCGTGTTCAGTTGTTAGTTTTGAAGATATTAATAAGATTAAACAGCTTACAGAACC
TCATCTCGTACCTCACCATACGGTTTTGAAATCTCGTAGTTTCAAAGGGGTGCAGTGTGAGTTTAATACAACTCAAGATG
TTAAATTACTACCTATTCATTTAAGTGGTTTAGATTTTAAAACTACACCTAGTGCACATATGCACTTAAATCAAAATGCG
ACGTTGAGCCTTAAATTTGAAATTTTTAATAATGCTCATGCTTGTTTAACTGATGAGAAGCTTCCTATTTATTTGGATGC
TATCTCTAATTTTCCTCTACAGGTCCTTGATAGTATTTTCAAAAAAGGAACCAGTTTTGCGGTTAAATATGGACAAACAA
TTGTAGAATTGAGCAAGAATCCATTCGAATTGATTGGTTTTGCAGAACAAGAAAGTTTATTACCGCTTGATCAACATACC
CATCATGCTTATCGTTTGTTGATGGAATACTTTTGTTTCCCGGAAAAGTTTAGTTATCTTAAGCTCGATTTAGATTTTTT
AAAGCGAATACCTCAGCATGTATCCGAACTTGAGCTTTTAATTCATTTCAAATTAAACTTAAATGATCAAGCCGTTGTTA
GAAACTATTCTGAGCTAAATATTGCAAACTTTAAATTATTTACTACCCCAGTAATTAATTTATTTGAAAAATATGCTGAA
CCCCAGAAGATAGTTCATAAGCAATTAGAATATCCTTTAGTTACAGATGCACATCATCCTGAGTTTTATCAGGTATATTC
AATACTTGAGATGAATATGGTGCGTGAAAAAACAAATCAAGAAGAAAGCTATGTTCCTGTTTTGCCTTTTTTTGCGATGA
GCCATTACCACAATGATACAGCTCGCTTTTTTTACTCAGTAAACTATCAAAAGTTACAGTCCAATTTCGTTGAAATGGGC
TATTCCATTATTTCTAAAAATTTAAATCCATTTTCAACGCGCTCAGATTTTATTAGCACCAAATTATTATGTTCAAACCG
TGATTTACCTCATGAAGCACTGGGTCAGTCTAATAACGTATTAAATTTAAATGATAGTAGCTTGGCGAGACGTGCCATTG
TTTTAAAACGACCTACCAAGCCTTATAAGTTTGAACAAGGCCAAAGTGAACAGTGGCGTGTGATCTCGCATCTTTCATTA
AATAGCTTGGCGCTTATGAAAGGGGATGCTGTTTCTCATGTTAAAGAGCTGTTGGCTTTATATAACTTACCGCAGTCAAA
AGAAAATTATTTAATTATAGAATCAATTAAAAAATTAGAATTTTCGCTTACCCATAAACTTGTAGATGGCAAACCATTTC
CAATGTTTGTAAGAGGAGTGAAAGCTGAATTACAAATTGATTCATCCGTATTTAGAGGGCATAGCTTATATATTTTTAGT
CAGTTATTAAGTCGTGTTTTTAATTTAAAGGTTCAAATTAATAGTTTTGTTGATTTGGTGGTTAAGGATTATTCATCTCA
GCAGGAGTTATACCAATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAA