Detailed information of component protein


Summary

Component ID T6CP003160
Component protein type TssG
T6SS ID (Type) T6SS00312 experimental (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11035
Coordinate (Strand) 2380727..2381725 (-)
NCBI ID 447113140
RefSeq NC_011595
Uniprot ID A0A0J1D4T6_ACIBA, A0A0E8PDN1_ACIBA, B0VB23_ACIBY
KEGG ID aby:ABAYE2410
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.1e-65 20..311
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWSDHFKFETSFNLNFPATEIESLELVDERVHLTNLIVGLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQQQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGGQLTTLGGSQPSLLGINTFCGETIQQIDGKIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQESGLGQGAFLMSRKPNTHNDETCYSLIGEQI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 333 a.a.    

>T6CP003160 NC_011595:c2381725-2380727 [Acinetobacter baumannii AB307-0294] [TssG]
MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWSDHFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGALPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGGQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKRQQYLKFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQESGLGQGAFLMSRKPNTHN
DETCYSLIGEQI*

  Nucleotide sequence: 999 bp    

>T6CP003160 NC_011595:c2381725-2380727 [Acinetobacter baumannii AB307-0294] [TssG]
ATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAACGGCTGAGTTGTTTCAACGCCCTAAATCTTTTGAGTTTATTCA
AGCAACACGTTTATTGCGTCATATGCCTGCCAATGACGCAGCTTTATCATGGTCTGACCATTTTAAATTTGAGACCTCAT
TTAACTTAAATTTTCCAGCCACTGAAATTGAAAGTTTAGAGTTAGTAGATGAGCGTGTTCATTTAACAAACCTGATCGTT
GGTCTTACCGGTATACAGGGTGCATTACCTTATACATATACAAATAAAATTAAGCAGGCTCCAAGGCAACAACGCGCTGA
AACGAAAGAGTTTTTAAGCTTGTTTAATCATAAGTTGACCAGTCAGTATGTAGAGTCAAGTATTACTTATCACTTGCCTG
TGCGCTATGAAATTGAAAATAAAAATGATTATTTGGATATTCTCCATGCATTGAATGGCTATGTTCGCTCACAACATCAG
CAACAAGACTTGGATGAATATTTCGCTGAATTTTCAGGCCTAATGCAGGGGCAAAATAATACGGTTCATGCTTTAAAGAC
GATGTTGAGTTGTATTTTTAAGCATGAAATTACAATTAAAGAGTTTGTACAGGAATCGTTTAAGTTAGCGGGTGGTCAGC
TAACCACTTTAGGTGGAAGTCAACCGAGCTTACTTGGTATTAACACATTTTGTGGGGAAACGATTCAACAAATTGATGGA
AAAATTGAGATTCAAATAGGTCCGCTTAAGCGTCAGCAATATTTAAAATTTTTACCTCATCAAGAGCTTAGCTTAAAGCT
CAAAAAAATCGTAGAAACCTGGTGCAGTCCAACTTTATCGATAGATTTAAGATTGATATTGGATGAGTCTGAAATACAAC
CTGTTCGCTTAACTCAAGGCCAAGAAAGTGGCCTAGGGCAAGGCGCTTTTTTAATGTCTCGTAAGCCTAATACACATAAC
GATGAAACATGTTATAGCCTTATAGGAGAGCAAATATGA