Detailed information of component protein


Summary

Component ID T6CP003159
Component protein type TssM
T6SS ID (Type) T6SS00312 experimental (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (1275 a.a.); Nucleotide sequence (3825 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11025
Coordinate (Strand) 2375463..2379287 (-)
NCBI ID 446479067
RefSeq NC_011595
Uniprot ID A0A0E4HKG1_ACIBA, B0VB21_ACIBY
KEGG ID aby:ABAYE2408
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 8e-83 496..837
IcmF-related_N PF14331.8 7.8e-79 188..444
IcmF_C PF06744.14 3.8e-18 1107..1197
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 MHTI
Transmembrane helix 5-27 LGYLWQYITNPKAIIALSLFVAL
Outside 28-36 MSSYTSIPR
Transmembrane helix 37-59 HIFWALASAYALGLIAYGIYWLI
Inside 60-442 QRKKHAVQGEELAQAIEKDTQAEYGKNKDKEELQLISQQMKESIQLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAGLSGTRNCDWFFSTEGILLDTAGRYSVYSEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRARIQDLTERLEVVVPVYLVFSKMDLIAGFTEFFEFYEAQEYNQAWGATLPYEQNSSHNAVDLFEKHYNILYDGLKGVSSTHLSRRHSQNISPSVMTFPLEFKTLKPALKSFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSEVKDQLKTTPNHGYFLKGLFSDVILKDKDLVKQHVNTSKKRQR
Transmembrane helix 443-462 YIAFIGALAGVSIILGVWVW
Outside 463-1274 SYRNNQQLIAEVQADLNKVVQLEKSSGQQLSTQLEALLILQRRLQQLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQRVKNNEATLKANHTNVEIKQTAQTQQYLEPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRADMIQEAEQILSYAMTLANDKQFPILDADSQLVDQTRQVLLSVIRGMPARDRVYNEIKMRAAVRFPALTVSQIVGDANKNIVLGSYALPGVFTQKAWNEYVEKAIEEAADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIHYAKATQFAQQVKNIDVLGEPQNSPIRTLIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQGPISQEYQMFYQLVRKRDDQQGKSLLDEYMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAVGFSEIDQQLLQKLVVSPLTQAFESLITPTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISRFVKESLDPFVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPTNGMATGELNSQAPAAPATNQSNFQFYPIQNPQLLSYTVDIDGQRMTYENGVQQWVNFIWPNQGSIPGARITAVDLQGQTHTIFDEPGEYGINRLIDSAQRKEQNGGFEMLWRSKTDPSLFVKMNFRLISSNSGSIGSSRGYSGMQLVDKVTADKAARVVSAQQAPAQAAAPVKTENPVSALAQPAAGVKP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9546 - -


  Protein sequence: 1275 a.a.    

>T6CP003159 NC_011595:c2379287-2375463 [Acinetobacter baumannii AB307-0294] [TssM]
MHTILGYLWQYITNPKAIIALSLFVALMSSYTSIPRHIFWALASAYALGLIAYGIYWLIQRKKHAVQGEELAQAIEKDTQ
AEYGKNKDKEELQLISQQMKESIQLIRKSKLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPFEETHQKMVSAG
LSGTRNCDWFFSTEGILLDTAGRYSVYSEDHSEWLGFLNILKKNRSKAPVNGLILIVSIAELVSQSPEHSLKLAKNLRAR
IQDLTERLEVVVPVYLVFSKMDLIAGFTEFFEFYEAQEYNQAWGATLPYEQNSSHNAVDLFEKHYNILYDGLKGVSSTHL
SRRHSQNISPSVMTFPLEFKTLKPALKSFIATLFEDNPYQFQPVFRGFYFTSALQEGVIESPMTEQIAQEFQLSQIAQSE
VKDQLKTTPNHGYFLKGLFSDVILKDKDLVKQHVNTSKKRQRYIAFIGALAGVSIILGVWVWSYRNNQQLIAEVQADLNK
VVQLEKSSGQQLSTQLEALLILQRRLQQLDEFDENRPLKFSFGLYQGNELREKLKAEYLKGVKQIVLIPTQQNIAQYLQR
VKNNEATLKANHTNVEIKQTAQTQQYLEPSDTNPQDAYNALKAYLMMSNPQYMDASHLSDQVTRFWRSWLDANKGQMPRA
DMIQEAEQILSYAMTLANDKQFPILDADSQLVDQTRQVLLSVIRGMPARDRVYNEIKMRAAVRFPALTVSQIVGDANKNI
VLGSYALPGVFTQKAWNEYVEKAIEEAADKPTDTKDWVLNSRQSDDLTFSGSPEQIRKQLTALYKQEYIAEWRKFLSGIH
YAKATQFAQQVKNIDVLGEPQNSPIRTLIERVAIETNWDNPVVQAELAAPQKGFIAWFKRKVLNHDDKQLANQAVTNAQG
PISQEYQMFYQLVRKRDDQQGKSLLDEYMTNLALVRSKFNELKNAGEIGPNAMTLVKQTLNEQTSVFNQTQKIVDEKMAV
GFSEIDQQLLQKLVVSPLTQAFESLITPTQDEINKLWVMQAYQPFTANLAKKYPFNSSASLQATSSEIGQILGENGSISR
FVKESLDPFVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYVAPTNGMATGELNSQAPAAPATNQSNFQFYPIQNPQLLSY
TVDIDGQRMTYENGVQQWVNFIWPNQGSIPGARITAVDLQGQTHTIFDEPGEYGINRLIDSAQRKEQNGGFEMLWRSKTD
PSLFVKMNFRLISSNSGSIGSSRGYSGMQLVDKVTADKAARVVSAQQAPAQAAAPVKTENPVSALAQPAAGVKP*

  Nucleotide sequence: 3825 bp    

>T6CP003159 NC_011595:c2379287-2375463 [Acinetobacter baumannii AB307-0294] [TssM]
ATGCATACAATTTTAGGCTACTTGTGGCAGTACATCACGAATCCTAAAGCAATTATCGCCTTGTCATTGTTCGTGGCATT
GATGTCTTCCTATACTTCAATTCCTCGCCATATATTTTGGGCTTTAGCATCTGCATATGCTTTAGGGCTCATCGCTTATG
GAATTTATTGGCTAATTCAGCGTAAAAAGCATGCTGTCCAAGGTGAAGAACTTGCGCAAGCGATTGAAAAGGATACACAA
GCAGAGTACGGCAAAAATAAAGATAAAGAAGAGCTGCAACTTATTAGCCAACAAATGAAAGAATCTATTCAATTGATTCG
TAAGTCAAAGCTAGGCGATAAAAAGGGGAACGCAGCACTATATGAGTTGCCATGGTATATGGTCATTGGTAACCCGGCTG
CTGGTAAAAGTTCTGCGATCTATAATTCTGGTTTAAAGTTTCCTTTTGAAGAAACCCATCAAAAAATGGTTTCGGCTGGT
TTAAGCGGTACGCGTAATTGTGACTGGTTTTTTTCGACTGAGGGTATTTTACTCGACACTGCTGGACGTTATTCGGTCTA
TAGTGAAGATCACTCTGAATGGTTAGGCTTTTTAAATATCTTAAAGAAGAACCGTTCTAAGGCTCCAGTAAATGGTTTAA
TTCTTATTGTTAGTATTGCTGAGCTTGTTAGTCAGAGTCCTGAACACTCATTAAAGCTTGCGAAAAATTTACGCGCTCGT
ATTCAGGATTTAACCGAACGTTTAGAAGTGGTTGTACCTGTATATCTAGTCTTTTCAAAAATGGATTTGATCGCGGGTTT
TACCGAATTTTTCGAATTCTATGAAGCACAAGAATATAATCAGGCGTGGGGCGCAACACTACCATATGAGCAAAACTCTT
CTCATAATGCTGTAGATCTTTTTGAGAAACACTACAATATTCTTTATGACGGTTTAAAAGGGGTCAGTTCAACTCATCTT
AGCCGTCGACATTCTCAAAATATCTCACCTAGTGTGATGACTTTCCCATTAGAATTTAAGACATTAAAACCTGCATTAAA
AAGTTTTATTGCGACACTGTTTGAAGATAACCCTTACCAGTTCCAACCAGTTTTCCGTGGGTTTTATTTCACAAGTGCTT
TGCAAGAAGGCGTAATAGAAAGTCCAATGACTGAGCAAATTGCACAGGAATTCCAGCTTTCCCAAATTGCTCAAAGTGAA
GTAAAAGATCAACTAAAAACAACGCCTAACCATGGTTATTTCTTAAAAGGCTTGTTTTCAGATGTCATTTTAAAAGATAA
AGATCTGGTTAAACAGCATGTCAATACAAGCAAAAAGCGTCAGCGTTATATTGCATTTATTGGTGCTTTAGCTGGCGTAT
CCATTATTCTAGGTGTGTGGGTTTGGTCATATCGTAACAATCAACAACTTATTGCTGAAGTTCAAGCTGATTTAAATAAA
GTTGTTCAATTGGAAAAGAGTTCAGGTCAACAATTGTCGACTCAATTAGAGGCCTTACTTATCTTGCAAAGACGTCTACA
ACAGTTAGATGAATTTGATGAAAATAGACCACTAAAATTTAGTTTTGGTTTATATCAAGGTAATGAGCTACGTGAAAAAT
TAAAAGCTGAATATTTAAAAGGTGTTAAGCAAATTGTTTTGATACCTACACAGCAAAATATTGCTCAGTATTTGCAACGT
GTAAAAAATAACGAAGCAACTTTAAAAGCAAATCATACCAATGTTGAGATCAAGCAAACTGCTCAAACTCAGCAATATTT
AGAGCCTTCGGATACCAACCCTCAAGATGCTTATAATGCTTTAAAAGCATATTTAATGATGAGCAATCCACAGTATATGG
ATGCGAGTCACTTAAGTGATCAGGTAACGCGTTTCTGGCGTTCTTGGCTTGATGCCAATAAAGGGCAGATGCCACGTGCA
GATATGATTCAAGAAGCTGAGCAGATCTTATCTTATGCAATGACATTGGCAAATGATAAACAATTCCCGATCTTGGATGC
TGACTCTCAACTTGTAGATCAGACACGTCAAGTATTGCTCTCTGTTATTAGAGGTATGCCAGCACGTGACCGTGTTTATA
ATGAAATTAAAATGCGTGCTGCTGTGCGCTTCCCAGCTTTAACTGTGAGCCAGATTGTTGGTGACGCAAATAAAAATATT
GTATTGGGTAGTTATGCATTACCAGGGGTATTTACTCAAAAAGCTTGGAACGAGTATGTAGAAAAAGCAATTGAGGAAGC
AGCAGACAAACCTACGGATACTAAAGACTGGGTGCTTAATAGCCGTCAATCTGATGATTTAACTTTCTCAGGTAGTCCAG
AGCAAATTAGAAAGCAGCTTACTGCATTGTATAAACAAGAATATATTGCAGAGTGGAGAAAATTCTTAAGTGGTATTCAC
TATGCAAAAGCAACTCAGTTTGCTCAGCAAGTTAAAAATATTGATGTATTGGGCGAACCACAAAATTCACCAATTCGCAC
ACTTATTGAACGCGTAGCCATTGAAACAAATTGGGATAATCCGGTCGTTCAAGCCGAGTTAGCAGCACCTCAAAAAGGAT
TTATTGCATGGTTTAAACGTAAGGTTTTAAACCATGATGATAAACAATTAGCAAATCAGGCTGTAACGAATGCTCAAGGG
CCTATTTCTCAAGAATATCAAATGTTCTATCAATTGGTTCGTAAACGTGATGATCAGCAAGGTAAATCTTTGCTTGATGA
ATATATGACGAATCTTGCCTTAGTACGTAGTAAGTTTAATGAACTTAAGAATGCGGGTGAGATCGGACCGAATGCGATGA
CATTGGTTAAGCAAACTTTAAATGAGCAGACATCGGTATTTAACCAGACTCAAAAAATTGTAGATGAAAAGATGGCGGTT
GGTTTCAGTGAAATTGATCAGCAACTTCTACAAAAATTAGTGGTGAGTCCACTTACCCAAGCCTTTGAAAGTTTAATTAC
ACCTACTCAAGATGAAATTAATAAGCTATGGGTAATGCAAGCTTATCAACCATTTACTGCAAATCTTGCTAAGAAATATC
CATTTAACTCATCAGCTTCTTTACAAGCAACAAGTAGTGAAATTGGACAAATTCTTGGTGAAAACGGCAGTATTTCCCGT
TTTGTTAAAGAGAGTTTAGATCCGTTTGTTATCCGCCGTGGTTATACCTTAACCTCAAAAACATGGAAAGATTTGGGGAT
TAGTTTAAACCCACAATTTGTCATGAACTTCCAACGCTATGTCGCACCTACAAATGGAATGGCAACAGGTGAGTTAAATA
GCCAAGCACCAGCTGCTCCGGCAACCAATCAGTCTAACTTCCAGTTCTACCCAATTCAAAACCCGCAGTTACTTTCATAT
ACCGTTGATATTGATGGTCAGCGTATGACTTATGAAAATGGGGTACAGCAATGGGTTAACTTTATTTGGCCAAATCAAGG
CAGTATTCCGGGTGCTCGTATTACGGCTGTAGATTTACAAGGTCAAACACATACCATTTTTGATGAACCAGGCGAATACG
GGATTAACCGTTTAATCGATAGTGCACAGCGTAAAGAGCAAAACGGTGGTTTTGAAATGCTTTGGCGCAGTAAGACAGAT
CCATCACTCTTTGTGAAAATGAACTTCCGTCTTATTAGTAGTAATTCAGGAAGTATCGGTTCAAGCCGTGGCTACTCTGG
TATGCAACTGGTGGACAAAGTGACTGCGGATAAAGCTGCTCGCGTTGTATCCGCACAGCAAGCACCAGCTCAAGCTGCTG
CTCCTGTCAAAACTGAAAATCCAGTTTCTGCACTAGCACAACCTGCTGCGGGAGTTAAGCCATGA