Detailed information of component protein


Summary

Component ID T6CP003158
Component protein type TssH
T6SS ID (Type) T6SS00312 experimental (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (893 a.a.); Nucleotide sequence (2679 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABBFA_RS11005
Coordinate (Strand) 2370516..2373194 (-)
NCBI ID 446018690
RefSeq NC_011595
Uniprot ID UPI0001D31A3D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.2e-41 605..773
AAA_lid_9 PF17871.3 1.3e-24 369..461
AAA PF00004.31 1.2e-11 229..342
ClpB_D2-small PF10431.11 2.3e-11 779..849
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-892 MSSLKILITKLSTAARTALEKSANACVLQQNYEIEIEHLFLELLNQPLENDLKILLKKYKISADALADDLKETISQLPKGNTRTPIFAKSIVRLFEQAWLLASAEQNPVIRSGHLLVALLTAPDLYQIATRASSLFDLFPIDSMKHKFLEICEKSVEQQEESKTSSQADELEQAATPTAKTQKTPALDQYTINLTEKAKNGGIDPVIGREYEIRLMLDILMRRRQNNPILTGEPGVGKTAVVEGLALKIAQGLVPEALKNVHLHVLDMGLLQAGASVKGEFENRLKQVIQEVQSSAHPIILFIDEAHTLIGAGGQAGQNDAANLLKPALARGELRTIAATTWAEYKQYFEKDAALSRRFQVVKVEEPTEEVAVDMLRAMIPVMQKHFNLQIDDEAIVTAVHASHRYISGRQLPDKAVSVLDTAAARVALTQNAQPVKLDQLKAQEHNLKLEQQILENEHRQIPIHHERLENLKNQLESLQSEIQETQEQWQKELELVRKIQELEAQSHSNESEAYDQINLIRKDLADIQGQQPLVFERVNSQIINEIISDWTGIPVGKMVNDEIKQILTLEDKLGERVMGQDYALTQLVQGIKTSKAKLEDPNKPQGVFLLVGPSGVGKTETALALANELYGGEQHLITINMSEYQEAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDFKNTTILLTSNTGSSAIMQACLNQPVEEWPTAEDLIEHLKPSLYKQFKPAFLGRMRIVPYFPLHDDLLVRIIKHKLGKITARIEKQYGTEVQYSDDLVELLLSRCTEVDSGARNVDNILNSTVLPALATEILVALADQKLPKLIMIDAKDDEIQYLLDPVAKPAKKRTSKKLKSEV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9631 - -


  Protein sequence: 893 a.a.    

>T6CP003158 NC_011595:c2373194-2370516 [Acinetobacter baumannii AB307-0294] [TssH]
MSSLKILITKLSTAARTALEKSANACVLQQNYEIEIEHLFLELLNQPLENDLKILLKKYKISADALADDLKETISQLPKG
NTRTPIFAKSIVRLFEQAWLLASAEQNPVIRSGHLLVALLTAPDLYQIATRASSLFDLFPIDSMKHKFLEICEKSVEQQE
ESKTSSQADELEQAATPTAKTQKTPALDQYTINLTEKAKNGGIDPVIGREYEIRLMLDILMRRRQNNPILTGEPGVGKTA
VVEGLALKIAQGLVPEALKNVHLHVLDMGLLQAGASVKGEFENRLKQVIQEVQSSAHPIILFIDEAHTLIGAGGQAGQND
AANLLKPALARGELRTIAATTWAEYKQYFEKDAALSRRFQVVKVEEPTEEVAVDMLRAMIPVMQKHFNLQIDDEAIVTAV
HASHRYISGRQLPDKAVSVLDTAAARVALTQNAQPVKLDQLKAQEHNLKLEQQILENEHRQIPIHHERLENLKNQLESLQ
SEIQETQEQWQKELELVRKIQELEAQSHSNESEAYDQINLIRKDLADIQGQQPLVFERVNSQIINEIISDWTGIPVGKMV
NDEIKQILTLEDKLGERVMGQDYALTQLVQGIKTSKAKLEDPNKPQGVFLLVGPSGVGKTETALALANELYGGEQHLITI
NMSEYQEAHTVSSLKGAPPGYVGYGQGGVLTEAVRRNPYSVVLLDEIEKAHSDVQELFYQVFDKGTLEDGEGRVIDFKNT
TILLTSNTGSSAIMQACLNQPVEEWPTAEDLIEHLKPSLYKQFKPAFLGRMRIVPYFPLHDDLLVRIIKHKLGKITARIE
KQYGTEVQYSDDLVELLLSRCTEVDSGARNVDNILNSTVLPALATEILVALADQKLPKLIMIDAKDDEIQYLLDPVAKPA
KKRTSKKLKSEV*

  Nucleotide sequence: 2679 bp    

>T6CP003158 NC_011595:c2373194-2370516 [Acinetobacter baumannii AB307-0294] [TssH]
ATGAGTAGTTTAAAAATTTTAATTACAAAACTTTCTACAGCTGCACGCACTGCTTTAGAAAAATCTGCTAATGCTTGTGT
TCTTCAGCAAAACTACGAAATTGAAATTGAACATTTATTTTTAGAGTTACTTAATCAGCCTTTAGAAAACGATTTAAAAA
TTTTATTAAAAAAATATAAAATCTCAGCCGATGCTTTAGCAGATGATTTAAAAGAAACAATTTCTCAATTACCAAAAGGT
AATACACGTACTCCAATTTTTGCTAAATCAATTGTTCGTTTATTTGAACAAGCTTGGTTATTGGCTTCAGCAGAACAAAA
TCCTGTCATTCGTAGTGGTCATTTACTGGTTGCATTATTAACTGCACCAGACCTCTATCAAATTGCAACGAGAGCTTCGA
GTTTATTTGATCTTTTCCCGATAGACTCAATGAAACATAAGTTTCTTGAAATTTGTGAAAAAAGTGTAGAACAACAAGAA
GAATCAAAAACATCTTCACAAGCAGATGAATTAGAACAAGCCGCGACTCCAACTGCAAAAACTCAAAAAACACCTGCTTT
AGATCAATATACAATTAATTTAACTGAAAAAGCGAAGAATGGTGGGATTGACCCTGTTATTGGGCGTGAATATGAAATTC
GTTTGATGCTTGATATTTTAATGCGCAGACGCCAGAACAACCCAATTTTAACTGGTGAGCCAGGTGTAGGTAAAACAGCT
GTAGTTGAAGGGTTAGCTTTAAAAATTGCTCAAGGTTTAGTTCCTGAGGCATTAAAAAATGTACATTTGCATGTTTTAGA
TATGGGGCTTTTGCAAGCTGGGGCAAGTGTTAAAGGTGAATTTGAAAACCGTTTAAAGCAAGTTATTCAAGAAGTCCAAT
CATCGGCTCATCCTATTATTTTATTTATTGATGAAGCGCATACGCTTATTGGAGCAGGTGGCCAAGCGGGGCAAAACGAT
GCTGCCAATCTTTTAAAACCTGCACTTGCTCGTGGCGAGTTACGTACTATTGCTGCAACAACATGGGCAGAATATAAACA
GTATTTTGAGAAAGATGCTGCATTGAGCCGCCGTTTTCAGGTGGTAAAGGTTGAAGAACCGACCGAAGAAGTTGCTGTGG
ATATGCTACGTGCAATGATTCCCGTAATGCAAAAGCACTTTAATTTACAAATTGATGATGAAGCAATTGTAACGGCTGTA
CATGCCTCTCATCGCTATATTAGTGGTCGTCAGCTCCCAGACAAAGCAGTAAGTGTTCTTGATACTGCAGCAGCGCGTGT
AGCTTTGACCCAAAATGCACAACCAGTCAAACTTGATCAATTGAAAGCACAAGAACATAACTTAAAGCTTGAGCAACAAA
TTTTGGAAAATGAACACCGTCAAATTCCAATACATCATGAAAGATTAGAAAATCTGAAAAACCAACTAGAGTCATTACAA
AGTGAGATCCAAGAGACTCAGGAACAATGGCAAAAAGAATTAGAGCTAGTTCGTAAAATTCAGGAATTAGAAGCGCAGAG
CCATTCTAATGAGTCTGAAGCCTACGATCAGATTAATTTAATACGCAAAGACCTTGCTGATATTCAGGGACAACAGCCGT
TAGTTTTTGAGCGAGTAAACTCTCAGATTATCAATGAAATTATTTCTGATTGGACAGGTATTCCTGTTGGGAAAATGGTC
AATGATGAAATTAAGCAGATTTTAACGCTTGAAGATAAATTAGGTGAGCGTGTAATGGGGCAAGATTATGCACTTACACA
ATTAGTTCAAGGGATTAAAACTTCAAAAGCTAAATTAGAAGATCCAAATAAACCTCAAGGGGTGTTCCTTTTAGTCGGGC
CTAGTGGGGTTGGTAAAACTGAAACTGCTTTAGCCTTAGCTAATGAGTTATATGGCGGTGAACAGCATTTAATCACGATT
AATATGTCTGAGTATCAAGAAGCACATACTGTCTCTTCGCTTAAAGGTGCACCTCCAGGCTATGTGGGCTATGGTCAGGG
TGGGGTTTTAACTGAAGCTGTACGCCGTAATCCTTATAGTGTTGTGTTACTCGACGAAATTGAAAAAGCACATAGCGATG
TTCAGGAGTTGTTCTATCAAGTATTTGATAAAGGTACTTTAGAGGATGGTGAAGGGCGCGTTATTGACTTTAAAAACACG
ACAATCTTATTAACTTCAAATACGGGCTCGAGTGCAATTATGCAGGCATGTTTAAATCAGCCTGTAGAAGAATGGCCTAC
CGCAGAAGATTTAATCGAACATTTAAAGCCGAGTTTATATAAACAGTTTAAGCCAGCCTTCTTAGGGCGCATGAGAATTG
TGCCATATTTCCCATTGCATGATGATTTATTGGTTCGAATTATTAAACATAAATTGGGCAAAATTACTGCTCGAATTGAA
AAACAATATGGAACGGAAGTTCAATATTCAGATGACTTGGTCGAGTTGCTACTCAGCCGTTGTACTGAAGTGGATAGTGG
CGCCCGTAATGTTGATAACATCTTAAATTCTACAGTTTTACCTGCTTTGGCAACTGAAATTTTAGTGGCGTTAGCAGATC
AAAAATTGCCGAAATTGATCATGATTGATGCAAAAGATGACGAGATCCAATATTTACTAGATCCTGTGGCGAAGCCTGCT
AAAAAACGGACTAGTAAAAAGTTGAAATCAGAAGTTTAA