Detailed information of component protein


Summary

Component ID T6CP003078
Component protein type TssC
T6SS ID (Type) T6SS00302 insolico (Type i1)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (491 a.a.); Nucleotide sequence (1473 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS06305
Coordinate (Strand) 1223737..1225209 (-)
NCBI ID 445979144
RefSeq NC_011205
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.1e-123 69..368
VipB_2 PF18945.2 2.2e-42 378..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-490 MSLQEEELVSTRTEQGSHAPSLLDEIMAQTRIQPGADGYDIARQGVTAFIASLLQSTSPAEPVNKLAVDSMIADIDARISRQMDAIIHAPQFQQLESFWRSMKALVDRVDFRENIKVHVLHVTKAELLEDFEFAPEITQSGFYKHVYSSGFGQFGGEPIAAVLGAYEFKNTTPDMKLLNYVSAVGAMAHAPFLSSVSPEFMGLKSWTELPNIKDLYAIFEGPAYTKWRALRDSEDSRYLGLTAPRFLLRQPYSATENPIKSFNYAEDVSHSHEHYLWGNTAWMLASNIADSFAKYRWAPNIIGPQSGGAVKDLPVHLYESMGQIQAKIPTEVLITDRREFELAEEGFITLTMRKNSDNAAFFSANSVQKPKHFPGKDAETNYKLGTQLPYLFIINRLAHYIKVLQREQLGSWKERSDLERELNIWVRQYVADQENPPADVRSRKPLRGAKVEVLDVDGEPGWYQVAISARPHFKYMGASFELSLVGRLDK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9513 - -


  Protein sequence: 491 a.a.    

>T6CP003078 NC_011205:c1225209-1223737 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssC]
MSLQEEELVSTRTEQGSHAPSLLDEIMAQTRIQPGADGYDIARQGVTAFIASLLQSTSPAEPVNKLAVDSMIADIDARIS
RQMDAIIHAPQFQQLESFWRSMKALVDRVDFRENIKVHVLHVTKAELLEDFEFAPEITQSGFYKHVYSSGFGQFGGEPIA
AVLGAYEFKNTTPDMKLLNYVSAVGAMAHAPFLSSVSPEFMGLKSWTELPNIKDLYAIFEGPAYTKWRALRDSEDSRYLG
LTAPRFLLRQPYSATENPIKSFNYAEDVSHSHEHYLWGNTAWMLASNIADSFAKYRWAPNIIGPQSGGAVKDLPVHLYES
MGQIQAKIPTEVLITDRREFELAEEGFITLTMRKNSDNAAFFSANSVQKPKHFPGKDAETNYKLGTQLPYLFIINRLAHY
IKVLQREQLGSWKERSDLERELNIWVRQYVADQENPPADVRSRKPLRGAKVEVLDVDGEPGWYQVAISARPHFKYMGASF
ELSLVGRLDK*

  Nucleotide sequence: 1473 bp    

>T6CP003078 NC_011205:c1225209-1223737 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssC]
ATGTCTTTACAGGAAGAAGAACTTGTTTCCACCCGCACTGAACAGGGAAGCCATGCCCCGTCGTTGCTTGATGAAATCAT
GGCACAAACCCGTATCCAGCCCGGCGCTGACGGTTATGATATTGCCCGTCAGGGCGTAACGGCTTTTATTGCCAGCCTCC
TGCAATCCACTTCACCTGCAGAACCCGTAAACAAACTGGCCGTGGACAGCATGATTGCGGACATCGACGCCCGTATCAGC
CGTCAGATGGATGCTATTATTCACGCCCCTCAGTTTCAGCAACTGGAGTCGTTCTGGCGTTCAATGAAAGCGCTGGTCGA
TCGCGTTGATTTTCGTGAGAATATTAAGGTGCATGTCCTCCATGTCACCAAAGCGGAATTGCTGGAAGATTTCGAGTTCG
CGCCGGAGATTACCCAGTCCGGCTTCTATAAGCATGTTTATTCCAGCGGGTTTGGGCAGTTTGGCGGCGAACCGATTGCG
GCTGTGCTGGGCGCATATGAGTTCAAAAATACCACGCCGGATATGAAGCTGCTGAACTATGTCAGCGCCGTCGGCGCAAT
GGCTCACGCGCCGTTCCTTTCTTCCGTGTCGCCGGAGTTTATGGGCCTGAAATCATGGACCGAGCTGCCCAATATCAAGG
ATCTCTACGCCATTTTTGAAGGTCCGGCCTACACAAAATGGCGCGCCCTGCGTGATTCCGAAGATTCCCGCTACCTGGGA
CTGACCGCGCCGCGTTTTCTGCTTCGCCAGCCCTATTCCGCGACCGAAAACCCGATTAAAAGCTTCAACTACGCCGAAGA
TGTGAGCCACAGCCACGAGCATTATTTGTGGGGCAATACCGCCTGGATGCTGGCCAGTAATATAGCCGATTCGTTCGCGA
AATACCGGTGGGCGCCCAATATTATCGGGCCGCAGAGCGGCGGCGCAGTAAAAGATCTGCCGGTACATTTATATGAGTCA
ATGGGGCAGATTCAGGCCAAGATCCCGACGGAGGTGTTGATCACCGACCGCCGTGAGTTCGAGCTGGCCGAAGAGGGGTT
CATCACCCTGACCATGCGTAAAAACAGCGATAATGCGGCGTTTTTCTCGGCTAACAGCGTTCAGAAACCCAAGCATTTTC
CGGGCAAAGACGCCGAGACCAACTACAAGCTGGGTACGCAGTTGCCTTATCTGTTCATTATTAACCGCCTCGCGCACTAC
ATTAAGGTGCTGCAACGCGAGCAGCTTGGGTCGTGGAAAGAGAGAAGCGATCTGGAGCGGGAGCTGAATATTTGGGTGCG
CCAGTATGTCGCCGATCAGGAGAATCCGCCTGCTGATGTCCGCAGCCGTAAGCCGCTGCGTGGCGCTAAAGTGGAGGTGC
TGGATGTGGACGGCGAGCCGGGCTGGTATCAGGTGGCGATTTCCGCAAGGCCGCACTTTAAATATATGGGCGCGTCGTTT
GAATTGTCTTTAGTCGGACGGTTAGATAAGTGA