Detailed information of component protein


Summary

Component ID T6CP003074
Component protein type TssK
T6SS ID (Type) T6SS00302 insolico (Type i1)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (444 a.a.); Nucleotide sequence (1332 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS06275
Coordinate (Strand) 1217239..1218570 (-)
NCBI ID 446168600
RefSeq NC_011205
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4e-138 20..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-443 MATTRNKVMWREGTLMRPHHLQQQQRYNDYVNNLRFRAIHDLSWGFTELSLNDELLGQGKIMIDSASGTLPDGTVFSLPDQDALPDPLHPDSFPDEESRNVYLALPVASDVRGEVSYGQQVGRYRLNDASVRDLHSENGDARTLTLGQLTPRIMSGADDMSAYVTLPLCRIKDRRADGSLMLDENFIPTCQNVYVSARLREFLREVQEAVGGRANDLANRIGSPAQSGIADVAEFMMLQLLNRNQTRFTHRARRPHLHPEDFYLDLAGLLGELMTFTEPSRLPCPLDVYDHRNLTDTFKTLLPEVKRALHTVLSPRAVNLPLHLRDGIWQADVHDSTLLQSATFVLAVAAKMETLQLQRQFIQQSKISSPEKIRNMVSVQIPGIPLHTLMVAPRQLPYHAGFSYFELDKSGAAWADVAATGAVALHVSGTFPDLNMQLWAIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9960 - -


  Protein sequence: 444 a.a.    

>T6CP003074 NC_011205:c1218570-1217239 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssK]
MATTRNKVMWREGTLMRPHHLQQQQRYNDYVNNLRFRAIHDLSWGFTELSLNDELLGQGKIMIDSASGTLPDGTVFSLPD
QDALPDPLHPDSFPDEESRNVYLALPVASDVRGEVSYGQQVGRYRLNDASVRDLHSENGDARTLTLGQLTPRIMSGADDM
SAYVTLPLCRIKDRRADGSLMLDENFIPTCQNVYVSARLREFLREVQEAVGGRANDLANRIGSPAQSGIADVAEFMMLQL
LNRNQTRFTHRARRPHLHPEDFYLDLAGLLGELMTFTEPSRLPCPLDVYDHRNLTDTFKTLLPEVKRALHTVLSPRAVNL
PLHLRDGIWQADVHDSTLLQSATFVLAVAAKMETLQLQRQFIQQSKISSPEKIRNMVSVQIPGIPLHTLMVAPRQLPYHA
GFSYFELDKSGAAWADVAATGAVALHVSGTFPDLNMQLWAIRG*

  Nucleotide sequence: 1332 bp    

>T6CP003074 NC_011205:c1218570-1217239 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssK]
ATGGCAACCACGCGAAACAAGGTGATGTGGCGGGAAGGAACGCTGATGCGTCCGCACCATCTCCAGCAGCAACAACGTTA
TAACGATTATGTGAATAATCTGCGTTTCCGGGCCATTCATGATTTGTCCTGGGGATTTACCGAGCTTTCCCTCAATGATG
AGCTGCTGGGACAGGGCAAAATTATGATCGACAGCGCGTCGGGCACCCTGCCGGACGGCACCGTGTTTTCCCTTCCGGAC
CAGGATGCGCTCCCCGATCCGCTGCATCCGGACAGTTTTCCTGATGAAGAAAGCCGCAATGTCTATCTGGCTTTACCCGT
TGCCAGCGATGTGAGAGGCGAAGTCAGTTACGGGCAGCAGGTTGGGCGTTACCGGCTGAACGATGCCAGTGTCCGGGATC
TGCACTCCGAGAATGGCGATGCCCGGACGCTGACGCTGGGCCAGTTGACCCCCCGCATTATGAGCGGAGCGGACGATATG
AGCGCGTATGTCACGTTGCCGCTGTGCCGTATCAAAGACAGGCGTGCGGACGGCTCCCTGATGCTGGATGAAAACTTTAT
CCCTACCTGCCAGAACGTTTATGTCAGCGCACGGCTGCGTGAATTTCTCCGGGAAGTCCAGGAAGCGGTTGGCGGCCGGG
CCAATGACCTGGCTAACCGCATTGGCTCTCCGGCGCAAAGCGGTATTGCCGACGTTGCGGAATTTATGATGCTGCAACTG
CTCAACCGTAACCAGACGCGGTTCACCCACCGCGCCCGCAGGCCGCACCTCCATCCGGAAGATTTTTATCTCGATCTGGC
CGGACTGCTGGGCGAGCTGATGACATTTACCGAGCCATCCCGCCTGCCCTGTCCGCTGGATGTCTACGATCACCGTAACC
TGACGGACACCTTCAAAACGCTGTTGCCGGAAGTGAAACGGGCATTACATACCGTCCTGTCGCCCAGGGCGGTTAACCTG
CCGCTGCATCTGCGCGATGGCATCTGGCAGGCTGACGTACATGACTCCACGCTGTTGCAGTCGGCCACCTTCGTGCTGGC
GGTGGCGGCGAAAATGGAGACGCTGCAACTCCAGCGCCAGTTTATCCAGCAGTCAAAAATTTCCTCGCCGGAAAAAATCC
GCAATATGGTCAGCGTGCAAATCCCCGGCATCCCGCTGCATACGCTGATGGTGGCCCCCCGCCAGCTTCCGTACCATGCC
GGTTTCAGCTATTTCGAACTGGACAAGAGCGGGGCCGCCTGGGCGGATGTGGCGGCCACCGGCGCTGTCGCCCTGCATGT
TTCCGGTACGTTCCCGGATCTGAACATGCAACTGTGGGCCATAAGAGGATAA