Detailed information of component protein


Summary

Component ID T6CP003068
Component protein type TssL
T6SS ID (Type) T6SS00301 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (435 a.a.); Nucleotide sequence (1305 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS01865
Coordinate (Strand) 320393..321697 (+)
NCBI ID 446054631
RefSeq NC_011205
Uniprot ID M7RXY3_SALDU
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 4.8e-59 63..265
OmpA PF00691.22 5.3e-16 328..426
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-242 MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIVEDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPAKLDAALVEPYRNLLVREMHLYQTLCDQANLRREHVLAVRYCLCTVLDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKLFQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRRDPVMPALSPDFQGAISGRLRRMRR
Transmembrane helix 243-265 VPVWLSAGIALLAMLTLFGLYSH
Inside 266-434 RMDVQTVTVQQHIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSRVVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAGRVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9837 - -


  Protein sequence: 435 a.a.    

>T6CP003068 NC_011205:320393-321697 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssL]
MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIVEDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPA
KLDAALVEPYRNLLVREMHLYQTLCDQANLRREHVLAVRYCLCTVLDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKL
FQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRRDPVMPALSPDFQGAISGRLRRM
RRVPVWLSAGIALLAMLTLFGLYSHRMDVQTVTVQQHIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSR
VVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALLTSGGVPAG
RVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE*

  Nucleotide sequence: 1305 bp    

>T6CP003068 NC_011205:320393-321697 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssL]
ATGACAGACAGTACCCTGACGCCGCCAGCGGCGGACATGATGTCCTTTTTGTCCACCACGCCGGAGCATAAGGACAGTGA
ATATGAAACGCCGGTACACACCAGCCAGCGCACGGAACTCAATGTCATCGTTGAAGACGGTCCGGACAGCAAACTTCGGC
TGGCTGAAATCAGCGCGGCGGCTAACCCGTTGCTCGCCGCTGCCCGGCCTTTATTGTGCGCTCTCGCAGCCATGCCCGCT
AAACTGGATGCGGCCCTGGTAGAGCCTTACCGTAATCTGCTGGTACGCGAGATGCATCTGTACCAGACATTATGCGATCA
GGCGAACCTGCGGCGCGAGCACGTACTGGCGGTACGTTACTGCCTGTGTACGGTGCTTGATGAAGCCGCCAATAACACAA
CCTGGGGACGGCGCGGCGTCTGGGCCGGAAAAAGCCTGCTGGTAACATTTCATGGTGAAAGCGAAGGCGGGATAAAACTT
TTCCAGATCATCGGGCGTCTGGCGGCCAGCTTCCAGGAACATGGCAACGTACTGGAGGTTATCTACCACCTGCTGGGGCT
GGGATTTGAAGGCCGCTACAGCGTGCAGCCAGACGGGCGTAAGCAACTGGACAATATTCGTCAGCAACTGCTGACACAGC
TTTCACAGCGTCGCGATCCGGTCATGCCCGCGCTCTCGCCTGACTTTCAGGGGGCGATAAGCGGACGACTGCGGCGGATG
CGCCGGGTGCCGGTCTGGCTGAGCGCCGGGATAGCCCTGTTGGCGATGCTGACGCTGTTTGGCCTTTACAGCCACCGGAT
GGATGTGCAGACCGTCACCGTACAACAGCATATTGATGCGATTGGTATAAAACTGCCGCCGCCGCCCGTGCCGGTTCATA
AGCTGCGGCTGAAAATCCTGCTGGCAAACGAAATCGCCCGTGGCCTGCTGACCGTGGACGAAGATGACCAGCACAGTAGG
GTGGTCTTCCGTGGCGACGCCATGTTTGTGCCGGGACAGAAAACGGTGAGTGACGCAATCCGGCCAGTGATTAACAAAGC
GGCGCGGGAAATCGCCCGCGTGGGCGGCGCAGTCACTGTAACGGGTCACACTGACAGCCAGCCCATTCATTCGGCTGAAT
TCCCATCCAACCTGGTGCTGTCGGAAAAACGGGCGGCGGAAGTTGCGGCGTTGCTGACCTCCGGCGGCGTACCTGCCGGA
CGGGTACATATCGTCGGCAAGGGCGATACGGTGCCGGTGGCGGATAACGGCAGTAAAGCCGGGCGGGCGAAAAACCGTCG
GGTGGAAATTCTGGTAGTGGAGTGA