Detailed information of component protein


Summary

Component ID T6CP003059
Component protein type TssA
T6SS ID (Type) T6SS00301 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Replicon chromosome
Sequence Protein sequence (352 a.a.); Nucleotide sequence (1056 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) SED_RS01790
Coordinate (Strand) 305501..306556 (-)
NCBI ID 446289771
RefSeq NC_011205
Uniprot ID M7RGD6_SALDU, A0A0H3N9G6_SALTS, A0A0W4I8F6_SALER, A0A2T8QSD7_SALET, A0A2R4DDE4_SALET, A0A0F6AX67_SALT1, H9L4K7_SALTM, E8XIT0_SALT4, Q93IT5_SALTY
KEGG ID seni:CY43_01335, sey:SL1344_0260, seo:STM14_0313, stm:STM0266, seb:STM474_0277
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 8.3e-31 7..136
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-351 MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFVSTPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRIQQAGAQGLAEMLTQLAELSVIWSDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQVRDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLAPDFSRLRQLLALLPDVVQTTTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNAPPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPLLRQAERLVGKRFSEVINEIPVELLEKWDALE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9751 - -


  Protein sequence: 352 a.a.    

>T6CP003059 NC_011205:c306556-305501 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssA]
MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFVSTPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRI
QQAGAQGLAEMLTQLAELSVIWSDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQV
RDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLGDLAPDFSRLRQLLALLPDVVQT
TTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNAPPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPL
LRQAERLVGKRFSEVINEIPVELLEKWDALE*

  Nucleotide sequence: 1056 bp    

>T6CP003059 NC_011205:c306556-305501 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] [TssA]
ATGGATATGTCCCTGACTAAACCGGTAAGCGCGGAACAACCCTGCGGCCCCGATCCGGAGTACGACCCGGAATACCTGCT
GCTGTTCAGCCGCGCCGCCCCTCAGGCGGAGGCGCAATATGGTGATTTTGTCAGTACGCCGGAAGCCGTGAACTGGCCGG
AAATTGAGCGTGATGCGCGCCGTCTGCTCACGCGCAGTAAGGATATCCGGGTGTTGATCCTGCTGCTGCGCAGTCGCATC
CAGCAGGCTGGCGCACAGGGACTGGCGGAAATGCTCACACAACTGGCAGAACTGAGCGTAATCTGGTCTGATGCACTCCA
TCCACAGCTGCTTACCGGCGAAGGCGCATCCGCAGAATCTATTGAAGATGCGTCGCTGGCGCGCAGTAATGCCCTGGCGG
CGCTGCTGGATCACGAAGGCGTGATGGCGGACATTCGCGGTATTACGCTGTCAAACAGTGCCGCCCTGCGCCTACAGGTA
CGGGATGTGGAGCGCGCGTTATCCGCTCCCCGCCCGGCTGATGCGCTGGCCCCCGAATCCGTCCGCCAGCAACTAGCCGA
CCTCGAAGCCCGTGGGGCATTACCGCTGGCGGCGTTTCGCGAAGCGCAGGAAAGCGCAGAACGCCTGCAAGTGTGGGCGC
GTGAGACATTAGGCGATCTGGCTCCAGATTTTTCACGCCTGCGGCAGTTGTTAGCGCTGCTGCCTGACGTGGTACAGACA
ACCACACCGGAAATCCCTCCGTCGCCAGCGCCAGTGCCAGACCCCGCAGGCACGGTTATGGATAATGCCGTTCCGGCACG
GGCAGAGGATGTGCCGCCTGTCAACGCGCCCCCCGGTATATCCCTCCCACACAATGCTGAACCGGGGCCAATTCGCGATC
GTAATGATGCGCTGGAGCGCCTGCGGTGCATTCGTCGCTGGTTTGAGAGCAGTGAACCCAGTAGCCCGACCATCCCACTG
TTACGCCAGGCTGAAAGACTGGTGGGAAAACGGTTCTCGGAGGTGATCAATGAGATCCCGGTGGAGTTGCTGGAGAAGTG
GGATGCCCTGGAGTGA