Detailed information of component protein
Summary
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | QU43_RS38275 |
| Coordinate (Strand) | 375780..376901 (+) |
| NCBI ID | WP_006484398.1 |
| RefSeq | NC_011000 |
| Uniprot ID | B4E6S0_BURCJ, A0A1V6KP57_9BURK |
| KEGG ID | bcj:BCAL0348 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpA_N | PF06812.14 | 2.3e-36 | 9..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-373 | MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWLTEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQHVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETVYRLAERFAREQGYTGSAPHTQAVQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYFRQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9718 | - | - |
Protein sequence: 374 a.a.
>T6CP002963 NC_011000:375780-376901 [Burkholderia cenocepacia J2315] [TssA]
MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWL
TEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQ
HVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETV
YRLAERFAREQGYTGSAPHTQAVQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYF
RQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS*
MPINLPELLTPISEASPSGDDLLFSNEFDAIQDARRYDDPTLDQGEWVTEIKEADWGFVVDHAGELLRTRTKDLRLAVWL
TEALALEDGITGLTEGYALLEGLCREFWDTFHPLPEDDDIEHRLGNVAWLSGRTAELLRAVPLTDGASNAFSTLDWEVAQ
HVAQSIKRDPEHADDIARGKPSIEQIDASRRVTSIAFYTALLANLKAFEFALDAFEERLVERAGDSAPSFRQARDAFETV
YRLAERFAREQGYTGSAPHTQAVQQAQPERIEPVFGQPIQTEETHVQQQTASRPPVTQTIAGIQNRAQAVDQLRAVARYF
RQTEPHSPVAYLADKAAEWADMPLHKWLESVVKDDGSLSHIRELLGVRPDEQS*
Nucleotide sequence: 1122 bp
>T6CP002963 NC_011000:375780-376901 [Burkholderia cenocepacia J2315] [TssA]
ATGCCGATCAATCTCCCCGAGCTGCTGACGCCGATCAGCGAGGCGTCGCCCAGCGGCGACGACCTGCTGTTCTCGAACGA
ATTCGACGCGATCCAGGACGCGCGGCGCTACGACGACCCGACGCTCGACCAGGGCGAATGGGTGACCGAGATCAAGGAGG
CCGACTGGGGCTTCGTCGTCGACCATGCGGGCGAGCTGCTGCGCACGCGCACGAAGGACCTGCGGCTCGCCGTGTGGCTG
ACCGAGGCGCTCGCGCTCGAGGACGGCATCACCGGCCTCACCGAAGGCTATGCGCTGCTCGAGGGTCTGTGCCGCGAGTT
CTGGGACACCTTCCACCCGCTGCCCGAGGACGACGACATCGAGCACCGGCTCGGCAACGTCGCATGGCTGTCCGGTCGCA
CGGCCGAGCTGCTGCGCGCGGTGCCGCTGACCGACGGTGCATCGAATGCGTTCAGCACGCTCGACTGGGAAGTCGCGCAG
CACGTCGCGCAGTCGATCAAGCGCGACCCCGAGCATGCGGACGACATCGCGCGCGGCAAGCCGTCGATCGAGCAGATCGA
CGCGTCGCGGCGCGTGACGTCGATCGCGTTCTACACGGCGCTGCTGGCGAACCTGAAGGCGTTCGAATTCGCGCTCGATG
CGTTCGAGGAGCGGCTCGTCGAGCGCGCGGGCGATTCGGCGCCGAGCTTCCGGCAGGCGCGCGACGCGTTCGAGACCGTG
TACCGGCTCGCCGAGCGCTTCGCGCGCGAACAGGGCTATACCGGCAGCGCGCCGCACACGCAGGCGGTGCAGCAGGCCCA
GCCCGAGCGCATCGAGCCGGTGTTCGGCCAACCGATCCAGACCGAGGAGACCCACGTGCAGCAGCAGACCGCTTCGCGTC
CTCCGGTGACGCAGACGATCGCCGGCATCCAGAACCGTGCGCAGGCCGTCGACCAGTTGCGTGCGGTGGCGCGCTATTTC
CGTCAGACCGAGCCGCACAGCCCAGTCGCGTATCTCGCCGACAAAGCGGCCGAATGGGCCGACATGCCGCTGCACAAGTG
GCTCGAGAGCGTCGTGAAGGACGACGGCTCGCTGTCGCATATTCGCGAACTGCTGGGCGTGCGGCCCGACGAGCAGTCGT
AA
ATGCCGATCAATCTCCCCGAGCTGCTGACGCCGATCAGCGAGGCGTCGCCCAGCGGCGACGACCTGCTGTTCTCGAACGA
ATTCGACGCGATCCAGGACGCGCGGCGCTACGACGACCCGACGCTCGACCAGGGCGAATGGGTGACCGAGATCAAGGAGG
CCGACTGGGGCTTCGTCGTCGACCATGCGGGCGAGCTGCTGCGCACGCGCACGAAGGACCTGCGGCTCGCCGTGTGGCTG
ACCGAGGCGCTCGCGCTCGAGGACGGCATCACCGGCCTCACCGAAGGCTATGCGCTGCTCGAGGGTCTGTGCCGCGAGTT
CTGGGACACCTTCCACCCGCTGCCCGAGGACGACGACATCGAGCACCGGCTCGGCAACGTCGCATGGCTGTCCGGTCGCA
CGGCCGAGCTGCTGCGCGCGGTGCCGCTGACCGACGGTGCATCGAATGCGTTCAGCACGCTCGACTGGGAAGTCGCGCAG
CACGTCGCGCAGTCGATCAAGCGCGACCCCGAGCATGCGGACGACATCGCGCGCGGCAAGCCGTCGATCGAGCAGATCGA
CGCGTCGCGGCGCGTGACGTCGATCGCGTTCTACACGGCGCTGCTGGCGAACCTGAAGGCGTTCGAATTCGCGCTCGATG
CGTTCGAGGAGCGGCTCGTCGAGCGCGCGGGCGATTCGGCGCCGAGCTTCCGGCAGGCGCGCGACGCGTTCGAGACCGTG
TACCGGCTCGCCGAGCGCTTCGCGCGCGAACAGGGCTATACCGGCAGCGCGCCGCACACGCAGGCGGTGCAGCAGGCCCA
GCCCGAGCGCATCGAGCCGGTGTTCGGCCAACCGATCCAGACCGAGGAGACCCACGTGCAGCAGCAGACCGCTTCGCGTC
CTCCGGTGACGCAGACGATCGCCGGCATCCAGAACCGTGCGCAGGCCGTCGACCAGTTGCGTGCGGTGGCGCGCTATTTC
CGTCAGACCGAGCCGCACAGCCCAGTCGCGTATCTCGCCGACAAAGCGGCCGAATGGGCCGACATGCCGCTGCACAAGTG
GCTCGAGAGCGTCGTGAAGGACGACGGCTCGCTGTCGCATATTCGCGAACTGCTGGGCGTGCGGCCCGACGAGCAGTCGT
AA