Detailed information of component protein
Summary
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | QU43_RS38245 |
| Coordinate (Strand) | 367436..368926 (+) |
| NCBI ID | WP_006484397.1 |
| RefSeq | NC_011000 |
| Uniprot ID | A0A124P676_9BURK, A0A2G1SLR6_9BURK, B4E6R4_BURCJ, A0A364GSY7_9BURK, A0A1V2X7M4_9BURK |
| KEGG ID | bcj:BCAL0342 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| VipB | PF05943.14 | 2.7e-136 | 68..370 |
| VipB_2 | PF18945.2 | 1.5e-46 | 380..490 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-496 | MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLISTQLSAVMHAPEFQRLESTWRGLDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGALIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGLTLPRFLGRLPFNPKDGQTAENFNFVEDVDGTDHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDELSISLRLVADLPKPANS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9250 | - | - |
Protein sequence: 497 a.a.
>T6CP002957 NC_011000:367436-368926 [Burkholderia cenocepacia J2315] [TssC]
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST
QLSAVMHAPEFQRLESTWRGLDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGL
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTDHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS*
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST
QLSAVMHAPEFQRLESTWRGLDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDAEDSRYVGL
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTDHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS*
Nucleotide sequence: 1491 bp
>T6CP002957 NC_011000:367436-368926 [Burkholderia cenocepacia J2315] [TssC]
ATGAACCAGCAAACGGCTGCGGCCCAAGCGAGCGGCGCGGAATACGCCGCCGGGACTTCGTTGCTCGACGACATCGTCGA
GAAGAGCAAGGTCGCGAAATCCGATTCCGAGCATGCGCGCGCGAAGGACCTGATCGGCGAACTCGTGCACCAGGTGCTCG
ACGGCACGGTGATCGTGTCGGACAACCTGTCGGCCACGATCGATGCGCGCGTCGCGGAACTCGACCGCCTGATTTCCACG
CAGCTTTCCGCGGTGATGCACGCGCCGGAATTCCAGCGCCTCGAAAGCACGTGGCGCGGGCTGGACTATCTGGTCAAGGA
AAGCAACACGGGCCAGACGATCAAGATCAAGGCGCTGCACGCACCGAAGCGCGACCTCGTGCGCGATTTCAAGGGCGCGA
GCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAGGAATTCGGCACGTTCGGCGGTTCGCCGTTCGGTGCG
CTGATCGGCGATTACGAGATCTCGCGCCAGCCGGAAGACATGTATTTCATCGAGCAGATGTCGCACGTCGCGGCGGCCGC
GCATGCGCCGTTCATCGCGTCGGCGTCGCCGGAGCTGCTCGGCCTCGAGTCGTTCTCCGACCTCGGCAAGCCGCGCGACC
TCGGCAAGGTGTTCGACACCGTCGAATACGCGAAGTGGAAATCGTTCCGCGACGCCGAGGATTCCCGCTACGTCGGCCTG
ACGCTGCCGCGCTTCCTCGGCCGCCTGCCGTTCAATCCGAAGGACGGCCAGACCGCGGAGAACTTCAACTTCGTCGAGGA
CGTCGACGGCACCGACCACGACAAGTACCTGTGGTGCAACGCGGCATGGGCCTTCGCGGCACGCCTGACGGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTCGAAGGCGGTGGCCTCGTCGAGGATCTGCCGACCCACACGTTCAAG
ACCGACGACGGTGAAGTCGCGCTGAAGTGCCCGACCGAAATCGCGATCACCGATCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTCCATTGCAAGAACTCAGATTACGCCGCGTTCTTCGCTGCGCAGTCGGTGCAGAAGCCGAAAA
AGTACAGCACCGACAGCGCGAATGCGAACGCCGTCCTGTCCGCCCAGCTTCAGTACATCTTCTCGGTATCGCGCGTCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCATCGGCGCAGAACGTGGAGACTTTCCTCAACCGGTG
GATTTCGCAGTACGTCCTGCTCGACGACAACGCCTCGCAGGAACAGAAAGCGCAATTCCCGCTGCGCGAGGCATCCATAC
AAGTGTCGGAGATTCCGGGCAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGTCCGCACTTTCAGCTCGACGAACTC
TCGATTTCTCTGCGACTTGTCGCTGATCTGCCCAAACCGGCAAATTCATAA
ATGAACCAGCAAACGGCTGCGGCCCAAGCGAGCGGCGCGGAATACGCCGCCGGGACTTCGTTGCTCGACGACATCGTCGA
GAAGAGCAAGGTCGCGAAATCCGATTCCGAGCATGCGCGCGCGAAGGACCTGATCGGCGAACTCGTGCACCAGGTGCTCG
ACGGCACGGTGATCGTGTCGGACAACCTGTCGGCCACGATCGATGCGCGCGTCGCGGAACTCGACCGCCTGATTTCCACG
CAGCTTTCCGCGGTGATGCACGCGCCGGAATTCCAGCGCCTCGAAAGCACGTGGCGCGGGCTGGACTATCTGGTCAAGGA
AAGCAACACGGGCCAGACGATCAAGATCAAGGCGCTGCACGCACCGAAGCGCGACCTCGTGCGCGATTTCAAGGGCGCGA
GCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAGGAATTCGGCACGTTCGGCGGTTCGCCGTTCGGTGCG
CTGATCGGCGATTACGAGATCTCGCGCCAGCCGGAAGACATGTATTTCATCGAGCAGATGTCGCACGTCGCGGCGGCCGC
GCATGCGCCGTTCATCGCGTCGGCGTCGCCGGAGCTGCTCGGCCTCGAGTCGTTCTCCGACCTCGGCAAGCCGCGCGACC
TCGGCAAGGTGTTCGACACCGTCGAATACGCGAAGTGGAAATCGTTCCGCGACGCCGAGGATTCCCGCTACGTCGGCCTG
ACGCTGCCGCGCTTCCTCGGCCGCCTGCCGTTCAATCCGAAGGACGGCCAGACCGCGGAGAACTTCAACTTCGTCGAGGA
CGTCGACGGCACCGACCACGACAAGTACCTGTGGTGCAACGCGGCATGGGCCTTCGCGGCACGCCTGACGGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTCGAAGGCGGTGGCCTCGTCGAGGATCTGCCGACCCACACGTTCAAG
ACCGACGACGGTGAAGTCGCGCTGAAGTGCCCGACCGAAATCGCGATCACCGATCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTCCATTGCAAGAACTCAGATTACGCCGCGTTCTTCGCTGCGCAGTCGGTGCAGAAGCCGAAAA
AGTACAGCACCGACAGCGCGAATGCGAACGCCGTCCTGTCCGCCCAGCTTCAGTACATCTTCTCGGTATCGCGCGTCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCATCGGCGCAGAACGTGGAGACTTTCCTCAACCGGTG
GATTTCGCAGTACGTCCTGCTCGACGACAACGCCTCGCAGGAACAGAAAGCGCAATTCCCGCTGCGCGAGGCATCCATAC
AAGTGTCGGAGATTCCGGGCAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGTCCGCACTTTCAGCTCGACGAACTC
TCGATTTCTCTGCGACTTGTCGCTGATCTGCCCAAACCGGCAAATTCATAA