Detailed information of component protein
Summary
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | QU43_RS38225 |
| Coordinate (Strand) | 363794..365140 (-) |
| NCBI ID | WP_006477098.1 |
| RefSeq | NC_011000 |
| Uniprot ID | B4E6R0_BURCJ, A0A364GSZ1_9BURK, A0A3N8HNQ3_9BURK, A0A0H2XRS4_BURCA, A2VTE5_9BURK, B1JUN4_BURCC, A0A109ELU1_9BURK |
| KEGG ID | bcj:BCAL0338, bcn:Bcen_2642, bcm:Bcenmc03_0442 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VasE | PF05936.14 | 1e-140 | 19..446 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-448 | MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQADDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSEPRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASFWLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTRYFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPAIPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9971 | - | - |
Protein sequence: 449 a.a.
>T6CP002954 NC_011000:c365140-363794 [Burkholderia cenocepacia J2315] [TssK]
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQA
DDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSE
PRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASF
WLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTR
YFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPA
IPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS*
MSYSAKVLWGEGLFLRPQHFQRQDAYHEARLFESIQAIQPYNWGVRSVRIDRDALGSNVLRVAELALVFPDGALYAAPQA
DDLPPPIALDTLPDGINEFVFYLALHPLRENGTNYSDDPAAGFMTRFVSEQTSVADNFTDAAEADITFLKTQVKLIAHSE
PRDQLLSVPLVRVRRTATSGFEIDDSFVPPCLAIEASPILHQRLRQLVDALQAKVNALYGFHREPSKNIIEFRSGDIASF
WLLHTANAAFATLAHLHQHAALHPERLFQELLRLAGQLMTFSKGYTLADLPVYRHDDPGPSFARLDLMLRELLDTVISTR
YFAITLDEVRPSFHLGRLDSGKIDDKTEFYLAVSADMPSVELVDAVPARFKVGAPDDVDKLVLSAMPGVRLSYTPQVPPA
IPVRPGACYFALDSRSPLYERMLQAQSAMIYAPTGINDLKFELIAVTS*
Nucleotide sequence: 1347 bp
>T6CP002954 NC_011000:c365140-363794 [Burkholderia cenocepacia J2315] [TssK]
ATGAGTTATTCGGCCAAGGTGCTGTGGGGGGAAGGGCTGTTCCTCCGGCCTCAACACTTTCAGCGGCAGGACGCGTACCA
CGAGGCGCGCCTGTTCGAGTCCATCCAGGCGATCCAGCCATACAACTGGGGCGTGCGCTCGGTGCGCATCGACCGCGACG
CGCTCGGCAGCAACGTGCTGCGGGTGGCCGAACTCGCGCTCGTGTTCCCGGACGGCGCGCTGTATGCCGCGCCGCAGGCC
GACGACCTGCCGCCGCCGATCGCACTGGATACGTTGCCCGACGGCATCAACGAATTCGTGTTCTATCTCGCGCTGCACCC
GCTGCGCGAGAACGGCACCAACTACAGCGACGATCCGGCCGCCGGCTTCATGACGCGGTTCGTCAGCGAGCAGACGAGCG
TCGCCGACAACTTCACCGACGCCGCCGAAGCCGACATCACGTTCCTGAAGACGCAGGTCAAGCTGATCGCGCACAGCGAG
CCGCGCGACCAGCTGCTGTCGGTGCCGCTCGTACGCGTGCGCCGCACCGCGACGTCCGGCTTCGAGATCGACGACAGCTT
CGTGCCGCCGTGCCTCGCGATCGAAGCGTCGCCGATCCTGCACCAGCGGCTGCGCCAGCTGGTCGACGCGCTGCAGGCGA
AGGTGAACGCGCTGTACGGCTTTCACCGCGAGCCGTCGAAGAACATCATCGAGTTCCGCTCGGGCGACATCGCGTCGTTC
TGGCTGCTGCACACGGCGAACGCCGCATTCGCGACGCTCGCGCACCTGCACCAGCATGCGGCGCTGCATCCGGAGCGGCT
GTTCCAGGAGCTGCTGCGCCTCGCCGGCCAGTTGATGACGTTCTCGAAGGGCTATACGCTCGCCGACCTGCCCGTGTACC
GCCACGACGATCCGGGCCCGAGCTTCGCGCGTCTCGACCTGATGCTGCGCGAACTGCTCGACACCGTGATCTCGACGCGC
TATTTCGCGATCACGCTCGACGAGGTGCGCCCGTCGTTCCACCTCGGCCGCCTCGATTCCGGCAAGATCGACGACAAGAC
CGAGTTCTACCTCGCAGTGTCCGCGGACATGCCGAGCGTCGAGCTCGTCGATGCGGTGCCGGCCCGCTTCAAGGTCGGCG
CGCCGGACGACGTCGACAAGCTCGTGCTGTCGGCGATGCCCGGCGTGCGGCTGTCGTACACGCCGCAGGTGCCGCCCGCG
ATTCCGGTGCGCCCCGGCGCGTGCTACTTCGCGCTCGATTCGCGCAGCCCGCTGTACGAGCGCATGCTGCAGGCCCAGTC
CGCGATGATCTACGCGCCGACTGGCATCAATGACCTGAAATTCGAACTGATCGCGGTCACATCATGA
ATGAGTTATTCGGCCAAGGTGCTGTGGGGGGAAGGGCTGTTCCTCCGGCCTCAACACTTTCAGCGGCAGGACGCGTACCA
CGAGGCGCGCCTGTTCGAGTCCATCCAGGCGATCCAGCCATACAACTGGGGCGTGCGCTCGGTGCGCATCGACCGCGACG
CGCTCGGCAGCAACGTGCTGCGGGTGGCCGAACTCGCGCTCGTGTTCCCGGACGGCGCGCTGTATGCCGCGCCGCAGGCC
GACGACCTGCCGCCGCCGATCGCACTGGATACGTTGCCCGACGGCATCAACGAATTCGTGTTCTATCTCGCGCTGCACCC
GCTGCGCGAGAACGGCACCAACTACAGCGACGATCCGGCCGCCGGCTTCATGACGCGGTTCGTCAGCGAGCAGACGAGCG
TCGCCGACAACTTCACCGACGCCGCCGAAGCCGACATCACGTTCCTGAAGACGCAGGTCAAGCTGATCGCGCACAGCGAG
CCGCGCGACCAGCTGCTGTCGGTGCCGCTCGTACGCGTGCGCCGCACCGCGACGTCCGGCTTCGAGATCGACGACAGCTT
CGTGCCGCCGTGCCTCGCGATCGAAGCGTCGCCGATCCTGCACCAGCGGCTGCGCCAGCTGGTCGACGCGCTGCAGGCGA
AGGTGAACGCGCTGTACGGCTTTCACCGCGAGCCGTCGAAGAACATCATCGAGTTCCGCTCGGGCGACATCGCGTCGTTC
TGGCTGCTGCACACGGCGAACGCCGCATTCGCGACGCTCGCGCACCTGCACCAGCATGCGGCGCTGCATCCGGAGCGGCT
GTTCCAGGAGCTGCTGCGCCTCGCCGGCCAGTTGATGACGTTCTCGAAGGGCTATACGCTCGCCGACCTGCCCGTGTACC
GCCACGACGATCCGGGCCCGAGCTTCGCGCGTCTCGACCTGATGCTGCGCGAACTGCTCGACACCGTGATCTCGACGCGC
TATTTCGCGATCACGCTCGACGAGGTGCGCCCGTCGTTCCACCTCGGCCGCCTCGATTCCGGCAAGATCGACGACAAGAC
CGAGTTCTACCTCGCAGTGTCCGCGGACATGCCGAGCGTCGAGCTCGTCGATGCGGTGCCGGCCCGCTTCAAGGTCGGCG
CGCCGGACGACGTCGACAAGCTCGTGCTGTCGGCGATGCCCGGCGTGCGGCTGTCGTACACGCCGCAGGTGCCGCCCGCG
ATTCCGGTGCGCCCCGGCGCGTGCTACTTCGCGCTCGATTCGCGCAGCCCGCTGTACGAGCGCATGCTGCAGGCCCAGTC
CGCGATGATCTACGCGCCGACTGGCATCAATGACCTGAAATTCGAACTGATCGCGGTCACATCATGA