Detailed information of component protein


Summary

Component ID T6CP002758
Component protein type TssH
T6SS ID (Type) T6SS00275 experimental (Type i3)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (907 a.a.); Nucleotide sequence (2721 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BPHY_RS30525
Coordinate (Strand) 665804..668524 (-)
NCBI ID WP_012405331.1
RefSeq NC_010625
Uniprot ID B2JW45_PARP8
KEGG ID bph:Bphy_6115
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.9e-37 608..774
AAA_lid_9 PF17871.3 1.6e-27 374..462
ClpB_D2-small PF10431.11 8.8e-13 783..850
AAA PF00004.31 1.4e-09 232..363

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-906 MTISRQSLFSKLGVTLFRSAESATAYCKLRGNPYVELVHWLHQLMQQPDSDLHRVLRHCEIDQDTLDRDMARALAGLPAGASSIIDFSHDVDHAIERGWLITSLDRNERRIRGAWLLVALLTTPELRRALLSISPAFAKIPVDGLSDVLPAWIDGSPEMGEAPHDSSDYSPALPGEASQAMPRTSKGSPLEQYCTDLTARARAGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVGKTAVVEGFALAVANGEVPPKLASVRLLSLDVGALLAGASMKGEFEARLKGVLEAAAKSQVSVILFVDEIHTLIGAGGQAGTGDAANLLKPALARGTIRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPEEVAAIDMVRGLAPTFARHHGVVILDEAIRAAVRFSHRYIPSRQLPDKAISLFDTACARVALSQHTPPRELQNLSERLRAATVERDLLQQEALIGLDADQAIASANARIEALTNDMAVVEGHWRAQLDAMQALASAREAALAGDQQAAGSLRDLEQQLTFLRGETPYVFPEVDEAIVAEIVSDWTGVPVGRMVTDEITAVRTLPSTLEARVIGQPDALHQIGERVQTARAGLTNPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNLITLNMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKGYMEDGDGRYIDFRNTTILLTSNVGSELTASLCADPALAPDTEALRAALAPELLKVFPAAFLGRITVVPYRPLASMSLARIVRLHLERVVRRMAETHQIVLNYEEAVVDYIVGRCLVQETGARVLIGFIEQHVLPRLSTLWLDAFSSKQPLSRIDIVLGDRDAPPATALLFRFPAAQQQASQTDGVNADAEESIVGQAL



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6716 - -



  Protein sequence: 907 a.a.    

>T6CP002758 NC_010625:c668524-665804 [Paraburkholderia phymatum STM815] [TssH]
MTISRQSLFSKLGVTLFRSAESATAYCKLRGNPYVELVHWLHQLMQQPDSDLHRVLRHCEIDQDTLDRDMARALAGLPAG
ASSIIDFSHDVDHAIERGWLITSLDRNERRIRGAWLLVALLTTPELRRALLSISPAFAKIPVDGLSDVLPAWIDGSPEMG
EAPHDSSDYSPALPGEASQAMPRTSKGSPLEQYCTDLTARARAGEIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG
KTAVVEGFALAVANGEVPPKLASVRLLSLDVGALLAGASMKGEFEARLKGVLEAAAKSQVSVILFVDEIHTLIGAGGQAG
TGDAANLLKPALARGTIRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPEEVAAIDMVRGLAPTFARHHGVVILDEAIR
AAVRFSHRYIPSRQLPDKAISLFDTACARVALSQHTPPRELQNLSERLRAATVERDLLQQEALIGLDADQAIASANARIE
ALTNDMAVVEGHWRAQLDAMQALASAREAALAGDQQAAGSLRDLEQQLTFLRGETPYVFPEVDEAIVAEIVSDWTGVPVG
RMVTDEITAVRTLPSTLEARVIGQPDALHQIGERVQTARAGLTNPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNL
ITLNMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEMFFQVFDKGYMEDGDGRYIDF
RNTTILLTSNVGSELTASLCADPALAPDTEALRAALAPELLKVFPAAFLGRITVVPYRPLASMSLARIVRLHLERVVRRM
AETHQIVLNYEEAVVDYIVGRCLVQETGARVLIGFIEQHVLPRLSTLWLDAFSSKQPLSRIDIVLGDRDAPPATALLFRF
PAAQQQASQTDGVNADAEESIVGQAL*

  Nucleotide sequence: 2721 bp    

>T6CP002758 NC_010625:c668524-665804 [Paraburkholderia phymatum STM815] [TssH]
ATGACGATTTCCCGTCAGTCCCTGTTCAGCAAGCTGGGAGTCACGTTGTTCAGGAGTGCTGAATCTGCAACGGCGTACTG
TAAACTCAGAGGCAATCCCTACGTCGAGCTGGTGCACTGGTTGCACCAGCTTATGCAGCAGCCTGATTCTGACCTGCATC
GTGTGCTGCGTCATTGTGAAATTGATCAGGACACGCTGGATCGTGACATGGCCCGTGCACTTGCGGGGTTGCCGGCAGGT
GCCAGTTCCATTATCGATTTTTCGCACGATGTCGATCACGCCATCGAGCGTGGCTGGCTCATCACATCGCTCGACAGGAA
TGAACGGCGTATTCGCGGCGCCTGGTTGCTGGTCGCCCTTCTGACGACGCCCGAACTGCGGCGTGCGCTGCTTTCCATTT
CACCGGCCTTCGCCAAGATTCCCGTAGACGGATTGAGCGATGTGCTGCCGGCGTGGATTGATGGTTCGCCCGAAATGGGC
GAAGCCCCGCACGATAGCAGCGACTACTCCCCCGCCCTTCCCGGCGAAGCCTCCCAGGCCATGCCGCGTACTTCAAAAGG
CTCGCCACTTGAACAGTACTGCACCGACCTGACGGCACGCGCACGTGCTGGCGAGATCGACCCCGTGGTGGGGCGCGAAC
TCGAGATCCGCACGATGATCGATGTGCTGCTGCGTCGCCGCCAGAACAACCCGCTGCTCACGGGTGAAGCCGGCGTTGGC
AAAACCGCTGTTGTAGAAGGGTTCGCACTCGCAGTCGCCAACGGTGAAGTCCCCCCCAAACTCGCCAGTGTGCGCTTGCT
GAGCCTCGACGTCGGTGCCCTCCTTGCCGGCGCCAGCATGAAGGGCGAATTCGAGGCGCGCCTGAAAGGCGTGCTTGAAG
CTGCCGCAAAGTCGCAGGTTTCGGTGATTCTTTTCGTGGATGAAATCCATACGCTGATCGGTGCAGGTGGTCAGGCAGGC
ACGGGCGACGCCGCCAACCTCCTCAAGCCGGCGCTCGCACGCGGTACGATTCGCACCATCGGCGCGACAACGTGGGCCGA
GTACAAGCGGCACATTGAGAAGGATCCTGCGCTCACCCGCCGCTTCCAGGTCCTTCAGGTTCCGGAGCCGGAGGAAGTGG
CCGCCATCGACATGGTGCGCGGTCTCGCGCCAACGTTTGCCCGGCATCATGGTGTCGTCATTCTCGACGAAGCGATTCGT
GCCGCGGTGAGGTTTTCGCATCGCTACATTCCCTCGCGGCAGTTGCCCGACAAGGCGATCAGCCTGTTCGATACGGCCTG
CGCCCGCGTGGCGCTCTCGCAGCATACGCCACCGCGCGAACTGCAAAACCTGTCCGAGCGTCTGCGTGCGGCCACGGTCG
AGCGCGACCTGCTCCAGCAGGAAGCGCTCATCGGTCTGGATGCGGATCAGGCCATCGCCTCTGCGAACGCGCGCATCGAA
GCCCTGACAAACGACATGGCCGTTGTCGAAGGACACTGGCGCGCCCAGCTCGACGCCATGCAGGCGCTTGCGAGCGCGCG
TGAGGCAGCGCTCGCCGGCGATCAGCAGGCAGCAGGTTCCTTGCGTGATCTTGAGCAACAGCTCACATTCCTCCGGGGCG
AGACGCCTTATGTATTCCCGGAAGTCGATGAAGCCATTGTCGCGGAAATCGTGTCGGACTGGACCGGCGTCCCCGTCGGG
CGCATGGTGACTGACGAGATCACGGCCGTTCGCACACTGCCCTCAACGCTCGAAGCGAGGGTCATCGGCCAACCCGATGC
GCTCCACCAGATCGGCGAGCGCGTGCAGACGGCGCGTGCCGGCCTCACGAACCCGAAGAAGCCCCTTGGCGTGTTCCTGC
TCGCGGGCCCTTCCGGTGTCGGCAAGACCGAGACGGCGCTCGCCCTTGCTGAAGCGCTGTATGGCGGCGAGCAGAACCTG
ATCACCCTCAACATGAGCGAGTATCAGGAAGCTCACACGGTCTCGGGGCTCAAGGGCGCGCCACCGGGTTACGTCGGTTA
CGGCGAGGGCGGCGTACTGACCGAAGCCGTGCGACGCCGCCCGTATTCGGTGGTGCTGCTCGACGAGATCGAGAAGGCGC
ATCGCGACGTCCACGAAATGTTCTTCCAGGTGTTCGACAAGGGCTACATGGAAGATGGTGACGGGCGGTATATCGACTTC
CGCAATACCACGATCCTGCTTACCAGCAACGTGGGCTCGGAGCTGACGGCAAGCCTGTGTGCGGACCCGGCGCTTGCACC
GGATACAGAGGCCTTGCGTGCTGCGCTCGCCCCCGAACTGCTCAAGGTGTTCCCGGCCGCATTCCTTGGTCGCATCACCG
TCGTGCCATACCGGCCGCTCGCCAGCATGTCACTCGCGCGCATCGTCAGGCTGCACCTGGAGCGCGTCGTGCGCCGCATG
GCCGAGACACACCAGATCGTACTGAACTACGAGGAGGCTGTCGTCGATTACATCGTCGGTCGATGTCTCGTGCAGGAGAC
GGGTGCACGTGTGCTGATCGGCTTCATCGAGCAGCACGTCCTGCCGCGTCTTTCTACCCTGTGGCTCGATGCCTTTTCGT
CGAAGCAGCCGCTCTCACGCATCGATATTGTCCTGGGCGATCGTGACGCTCCGCCTGCTACCGCGCTGCTGTTCCGGTTC
CCGGCTGCGCAGCAGCAGGCCAGCCAGACCGATGGCGTCAACGCTGACGCCGAGGAATCCATCGTCGGGCAGGCTCTCTG
A