Detailed information of component protein


Summary

Component ID T6CP002757
Component protein type TssB
T6SS ID (Type) T6SS00275 experimental (Type i3)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (178 a.a.); Nucleotide sequence (534 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BPHY_RS30520
Coordinate (Strand) 665221..665754 (-)
NCBI ID WP_012405330.1
RefSeq NC_010625
Uniprot ID B2JW44_PARP8
KEGG ID bph:Bphy_6114
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 6.2e-57 11..161

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-177 MSSSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVDPLPAVADRRFLDIDIDNFDERMKAIRPRVAFAVPSTLTGEGQMMVDMTFESIEDFSPAAIARKVEPLRQLLEARTQLANLQTYMDGKSGAESLVNQLLQDPSLLKSLAAAPKPQAAVDTPEASDTN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -



  Protein sequence: 178 a.a.    

>T6CP002757 NC_010625:c665754-665221 [Paraburkholderia phymatum STM815] [TssB]
MSSSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVDPLPAVADRRFLDIDIDNFDERMKAIRPRV
AFAVPSTLTGEGQMMVDMTFESIEDFSPAAIARKVEPLRQLLEARTQLANLQTYMDGKSGAESLVNQLLQDPSLLKSLAA
APKPQAAVDTPEASDTN*

  Nucleotide sequence: 534 bp    

>T6CP002757 NC_010625:c665754-665221 [Paraburkholderia phymatum STM815] [TssB]
ATGTCTTCCAGCAGTTCGCAGAAGTTCATCGCACGCAACCGCGCACCACGTGTGCAGATCGAGTATGACGTCGAGGTCTA
TGGCTCCGAAAAGAAGGTCGAACTCCCGTTCGTGATGGGCGTGCTCGCCGATCTCTCGGGCAAGCCGGTCGACCCTCTGC
CCGCTGTGGCAGACCGCCGCTTCCTCGATATTGATATTGACAATTTTGATGAACGCATGAAAGCCATCCGGCCGCGCGTC
GCGTTTGCCGTGCCGAGCACGCTCACCGGCGAAGGCCAGATGATGGTCGACATGACCTTCGAAAGCATCGAGGACTTCTC
GCCTGCGGCCATCGCGCGCAAGGTCGAACCGCTTCGACAACTGCTTGAGGCGCGCACGCAACTCGCGAACCTGCAAACGT
ACATGGACGGCAAGTCGGGCGCGGAATCGCTCGTGAACCAGCTGCTTCAGGATCCCTCGCTTCTGAAGTCACTGGCCGCC
GCACCGAAACCGCAGGCCGCCGTTGACACTCCGGAAGCCAGCGACACGAACTGA