Detailed information of component protein


Summary

Component ID T6CP002744
Component protein type TssH
T6SS ID (Type) T6SS00274 experimental (Type i4a)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (910 a.a.); Nucleotide sequence (2730 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 516865..519594 (+)
NCBI ID WP_012405207.1
RefSeq NC_010625
Uniprot ID B2JVS0_PARP8
KEGG ID bph:Bphy_5984
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-909 MDIDIRTLLSRLNPECKLAMEQAAQLCVRQTHYNVDVEHLLLTLLESDAPDLRAILAHFDIKPETLTAQLQKAVDLFKRGNGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRSGTLILALLEVGSLRGMLLESAPALLKIPRASLREQIGMIVAGSAEDAGGAQARASAAPGAGQPGPASSAAAPQLDGGMPTMPSGATASQGRQTALDQYTVDLTGFAREGKIDPIRGRDAEIRQLIDVLLRRRQNNPILTGEAGVGKTAVVEGFAQRIVQGDVPPALANVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVKASPAPVILFIDEAHQLIGAGGSEGQGDAANLLKPALARGELRTIAATTWAEYKKYVERDPALARRFQVVKVEEPSEAVAIEMLRGMVQKLEEHHGVEILDEAVRDAVKLSHRYISGRQLPDKAISVLDTACARVAIGQNGLPEDIEALGRSIETAENQLRIARHEAATGAERADVMAGLVKQLEDERAQHVRLTEKLTTEKRAVEEILAWRKKIRGYLTNQNDVLEAEDGESLTANLSRLEKGLEAVQNDEPMVPVCVDSETVAKVISGWTGIPVGRMLADELHTVLYLQDKLAERVVGQDEALDAIARRVRTFRADLDDPGKPVGVFLLVGPSGVGKTETAFALADMLYGGERNMITVNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVLLLDEMEKAHPDVLELFFQVFDKGVMEDGEGVPIDFKNTLILLTSNAAQDVITDACRGGRRPPPEELIEKLRPALLKQFSPAFLGRLVLVPYYHLGDAQINAIVNLKLERLAQRFSRNHHAPLTWDEGLATLIAQRCKEVDSGARNVDHILTQSVLPELARQVLERISISEPFGGVHLALSAAGDIAFRFLPKEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9974 - -


  Protein sequence: 910 a.a.    


  Nucleotide sequence: 2730 bp