Detailed information of component protein


Summary

Component ID T6CP002743
Component protein type TssG
T6SS ID (Type) T6SS00274 experimental (Type i4a)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (378 a.a.); Nucleotide sequence (1134 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS29910
Coordinate (Strand) 515720..516853 (+)
NCBI ID WP_012405206.1
RefSeq NC_010625
Uniprot ID B2JVR9_PARP8
KEGG ID bph:Bphy_5983
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-78 22..350
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-377 MEAMGADDGLPAVALIARLKANPQSFDLFQAISLLERAAPWARPLGRGNGLGEAVRFAGHVSLAFEASDIRSVREHAVPPDEAHARPAHEDEHASRERRGPYASYTVTTPVLTLAGANGPLPMAYTELVLARRAQRDTATADLLDIFNHRFLSFLYRSRKKHAPGLNWRSPHGSALAAALDALSNLGLRAGVNAAVRGPQGARLWMRHAGLLGAAPRSMTGLLAMLSDRLGLEVQGAQFVGGWREIDAADSLRLAGARSRAPRLGGAAVLGRRTWDEASGICIEFPGLTKEQFEALLPGGRDHAMAAWLIRSYLQQDFDVQFVLHLAPQPVACAAGGARAARLGWTSWLGGARHDTHTPEPVRLAMREATASTPTNL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9839 - -


  Protein sequence: 378 a.a.    

>T6CP002743 NC_010625:515720-516853 [Paraburkholderia phymatum STM815] [TssG]
MEAMGADDGLPAVALIARLKANPQSFDLFQAISLLERAAPWARPLGRGNGLGEAVRFAGHVSLAFEASDIRSVREHAVPP
DEAHARPAHEDEHASRERRGPYASYTVTTPVLTLAGANGPLPMAYTELVLARRAQRDTATADLLDIFNHRFLSFLYRSRK
KHAPGLNWRSPHGSALAAALDALSNLGLRAGVNAAVRGPQGARLWMRHAGLLGAAPRSMTGLLAMLSDRLGLEVQGAQFV
GGWREIDAADSLRLAGARSRAPRLGGAAVLGRRTWDEASGICIEFPGLTKEQFEALLPGGRDHAMAAWLIRSYLQQDFDV
QFVLHLAPQPVACAAGGARAARLGWTSWLGGARHDTHTPEPVRLAMREATASTPTNL*

  Nucleotide sequence: 1134 bp    

>T6CP002743 NC_010625:515720-516853 [Paraburkholderia phymatum STM815] [TssG]
ATGGAAGCAATGGGAGCCGATGACGGGCTGCCAGCAGTTGCTCTGATCGCCCGTCTCAAGGCGAATCCGCAGAGCTTCGA
TCTGTTCCAGGCGATCAGCCTCCTGGAGCGGGCCGCGCCTTGGGCGCGTCCGCTCGGACGGGGCAATGGGCTCGGCGAAG
CCGTGCGTTTTGCCGGTCACGTCTCGCTCGCATTCGAGGCGAGCGATATCCGCAGTGTGCGCGAACATGCCGTGCCGCCA
GACGAGGCGCACGCCCGCCCCGCACACGAAGATGAACACGCGTCGCGTGAGCGGCGCGGGCCGTATGCGAGCTATACGGT
CACGACGCCCGTGCTCACGCTGGCAGGCGCGAACGGCCCGCTACCGATGGCCTATACCGAGCTGGTGCTTGCGCGCCGGG
CGCAACGGGACACGGCGACGGCAGACCTGCTCGACATCTTCAATCACCGATTCCTGTCGTTCCTCTATCGCAGCCGCAAG
AAGCATGCGCCGGGCTTGAACTGGCGCTCGCCGCACGGCTCTGCGCTCGCTGCGGCGCTGGATGCACTGAGCAATCTCGG
CTTGCGGGCAGGCGTGAATGCCGCCGTGCGCGGGCCGCAGGGCGCGCGTCTGTGGATGCGGCATGCGGGCCTGCTCGGCG
CTGCGCCCCGATCGATGACCGGCCTGCTCGCGATGCTCTCCGATCGCCTCGGTCTCGAGGTGCAGGGTGCGCAGTTCGTC
GGCGGCTGGCGCGAGATCGACGCAGCCGATTCGCTGCGCCTTGCCGGCGCCCGTTCGCGCGCGCCGCGTCTGGGCGGCGC
GGCCGTGCTCGGACGACGCACCTGGGACGAGGCAAGCGGCATCTGCATCGAGTTTCCCGGACTGACGAAAGAACAGTTCG
AAGCGCTGCTGCCGGGCGGCCGCGATCACGCAATGGCGGCCTGGTTGATCCGCTCTTATCTGCAGCAGGACTTCGACGTT
CAGTTCGTGCTACATCTCGCGCCGCAACCGGTCGCCTGCGCAGCAGGCGGTGCGCGTGCGGCCCGGCTTGGCTGGACATC
CTGGCTGGGCGGCGCGCGTCACGACACCCACACGCCGGAGCCGGTGCGCCTCGCCATGCGCGAAGCGACCGCTTCCACGC
CGACGAATCTTTAA