Detailed information of component protein


Summary

Component ID T6CP002742
Component protein type TssF
T6SS ID (Type) T6SS00274 experimental (Type i4a)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (586 a.a.); Nucleotide sequence (1758 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS29905
Coordinate (Strand) 514008..515765 (+)
NCBI ID WP_041765651.1
RefSeq NC_010625
Uniprot ID UPI00031704A3
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3e-196 4..581
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-585 MAPDDILQYYKRELSYLRLQGADFARRYPKIASRLALHGTESLDPHTERLIEATAFLAARVHRDLDQEFPQVASALLDNVCPSLVQPVPSMTVAQFDLDPTQGKVTAGFLVPRHTGLQARTETGDTCRFRSAWDAVLWPLKISHAAFGDDATLRLTLECAPGVDFSELELKQLRIHLHGDWMVTMPLYELLVSGVADVSVRPEGRPSASLLPARAWREVGYAQADDVLPRPPNAQPAYSLMQEYFAFPRKFHFFDLHHLEGRLGSGRRCEVVFHLDRSPRGLGMLRAEHFQLGCTPIVNLFSQTSEPIVIDHRHYEYRLVADHRRESMTEIHSVASVVASDPSTDRVEHVPCFSAIDHVHTDGNTVFWSARREHSLRENVHGTDTFLSFVNAANTQSDPGTPVIYANVLCTNRRLAEQVPVGARMLLEKVSQNTRVRCLYEPTAQRSPSLGSETLWRLISLLTLNYHSLVSGATGRAQLQEMLRLFASESTREQDQIRGIRSVEARSVTAHVGSDAWRGYCRGTEVAVEFDPETFVGGSPLLLGAVLARFFAMYTSVNSFVRLVVRRGDETWKQWEPMTGCQQLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9946 - -


  Protein sequence: 586 a.a.    

>T6CP002742 NC_010625:514008-515765 [Paraburkholderia phymatum STM815] [TssF]
MAPDDILQYYKRELSYLRLQGADFARRYPKIASRLALHGTESLDPHTERLIEATAFLAARVHRDLDQEFPQVASALLDNV
CPSLVQPVPSMTVAQFDLDPTQGKVTAGFLVPRHTGLQARTETGDTCRFRSAWDAVLWPLKISHAAFGDDATLRLTLECA
PGVDFSELELKQLRIHLHGDWMVTMPLYELLVSGVADVSVRPEGRPSASLLPARAWREVGYAQADDVLPRPPNAQPAYSL
MQEYFAFPRKFHFFDLHHLEGRLGSGRRCEVVFHLDRSPRGLGMLRAEHFQLGCTPIVNLFSQTSEPIVIDHRHYEYRLV
ADHRRESMTEIHSVASVVASDPSTDRVEHVPCFSAIDHVHTDGNTVFWSARREHSLRENVHGTDTFLSFVNAANTQSDPG
TPVIYANVLCTNRRLAEQVPVGARMLLEKVSQNTRVRCLYEPTAQRSPSLGSETLWRLISLLTLNYHSLVSGATGRAQLQ
EMLRLFASESTREQDQIRGIRSVEARSVTAHVGSDAWRGYCRGTEVAVEFDPETFVGGSPLLLGAVLARFFAMYTSVNSF
VRLVVRRGDETWKQWEPMTGCQQLL*

  Nucleotide sequence: 1758 bp    

>T6CP002742 NC_010625:514008-515765 [Paraburkholderia phymatum STM815] [TssF]
ATGGCGCCCGACGACATCCTGCAATACTACAAACGCGAACTGTCGTACCTGCGTCTGCAAGGCGCGGACTTCGCACGCCG
CTATCCGAAGATTGCATCGCGGCTCGCGTTGCACGGCACGGAATCGCTCGACCCGCACACGGAGCGGCTGATCGAAGCGA
CGGCGTTTCTCGCTGCTCGCGTGCACCGCGATCTCGATCAGGAATTCCCGCAGGTCGCGTCAGCGCTGCTCGACAACGTG
TGTCCCTCGCTCGTACAACCCGTGCCATCGATGACCGTCGCGCAGTTCGATCTCGATCCGACTCAGGGCAAAGTGACGGC
GGGTTTTCTGGTGCCGCGTCACACCGGACTGCAGGCGCGCACGGAAACAGGCGATACGTGCCGCTTCCGCAGTGCATGGG
ACGCGGTGCTGTGGCCGCTGAAGATCAGTCATGCCGCATTCGGTGACGATGCGACGCTGCGGCTCACGCTTGAGTGCGCG
CCGGGCGTCGACTTTTCCGAGCTGGAACTGAAGCAACTACGCATTCACCTCCACGGCGACTGGATGGTCACGATGCCGCT
CTATGAATTGCTGGTGTCGGGTGTTGCGGACGTGTCGGTGCGGCCCGAAGGCCGTCCGTCGGCGTCGCTGCTGCCAGCGC
GTGCGTGGCGCGAAGTCGGGTATGCGCAAGCCGACGATGTGCTGCCGCGCCCACCCAATGCACAGCCGGCCTATTCGCTG
ATGCAGGAATACTTCGCCTTCCCGCGCAAGTTCCATTTCTTCGATCTTCATCACCTGGAAGGCCGGCTAGGATCGGGGCG
CCGCTGCGAAGTCGTGTTTCATCTTGACCGTTCGCCGCGCGGCCTCGGCATGCTGCGCGCTGAACATTTTCAGCTTGGCT
GCACGCCCATTGTCAATCTGTTCTCGCAGACGAGCGAGCCGATCGTCATCGACCATCGGCACTATGAATACCGGCTCGTC
GCCGATCATCGCCGCGAGTCGATGACGGAAATCCATTCGGTTGCATCCGTCGTCGCGTCGGACCCGTCGACCGATCGCGT
TGAGCACGTGCCGTGCTTTTCCGCGATCGATCATGTTCACACGGACGGCAACACCGTTTTCTGGTCGGCGCGACGCGAAC
ACAGCCTGCGCGAAAACGTCCATGGAACGGACACGTTCCTGAGTTTCGTCAATGCCGCCAACACGCAAAGCGATCCCGGC
ACGCCCGTCATTTACGCGAACGTGCTGTGCACGAACCGCCGGCTTGCGGAACAGGTGCCCGTGGGCGCGCGCATGCTGCT
CGAAAAGGTGTCGCAGAACACCCGTGTTCGCTGCCTTTACGAACCGACAGCGCAGCGCAGTCCTTCGCTCGGTAGCGAGA
CCTTGTGGCGGCTGATTTCGCTGCTCACGCTCAACTATCACTCGCTGGTGAGCGGCGCGACGGGACGCGCGCAATTGCAG
GAGATGCTGCGGCTTTTCGCGTCCGAGAGCACGCGCGAGCAGGACCAGATTCGCGGCATCCGCAGTGTAGAAGCGCGCAG
CGTCACCGCGCACGTCGGCAGCGACGCGTGGCGCGGCTATTGCCGCGGCACCGAAGTCGCGGTCGAGTTCGACCCGGAGA
CCTTCGTCGGCGGTTCGCCTTTGCTGCTGGGCGCCGTGCTCGCGCGTTTCTTTGCGATGTACACGTCGGTCAATTCATTT
GTACGGCTGGTGGTGCGCCGTGGAGACGAGACATGGAAGCAATGGGAGCCGATGACGGGCTGCCAGCAGTTGCTCTGA