Detailed information of component protein


Summary

Component ID T6CP002740
Component protein type TssD
T6SS ID (Type) T6SS00274 experimental (Type i4a)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (163 a.a.); Nucleotide sequence (489 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BPHY_RS29895
Coordinate (Strand) 512987..513475 (+)
NCBI ID WP_012405203.1
RefSeq NC_010625
Uniprot ID B2JVR6_PARP8
KEGG ID bph:Bphy_5980
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 4.4e-28 6..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-162 MDTVLLKIKDIKGNSTLDGAADQIVLYSYSIGVAMTMNRDVGNTERTMGRPSFQEFGLTKATDQATPALYSACAAGTKLGDATISIGRNENGKFMSLLQYTLSDAMISTIATSGSGESVDSFSINFSKITTVYTQQNVDSTKKGTASFGWDLSKNVSAPPAG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9902 - -



  Protein sequence: 163 a.a.    

>T6CP002740 NC_010625:512987-513475 [Paraburkholderia phymatum STM815] [TssD]
MDTVLLKIKDIKGNSTLDGAADQIVLYSYSIGVAMTMNRDVGNTERTMGRPSFQEFGLTKATDQATPALYSACAAGTKLG
DATISIGRNENGKFMSLLQYTLSDAMISTIATSGSGESVDSFSINFSKITTVYTQQNVDSTKKGTASFGWDLSKNVSAPP
AG*

  Nucleotide sequence: 489 bp    

>T6CP002740 NC_010625:512987-513475 [Paraburkholderia phymatum STM815] [TssD]
ATGGATACCGTTCTTCTTAAGATCAAGGACATCAAGGGCAATTCGACGCTCGACGGCGCGGCAGATCAAATCGTCCTGTA
CTCGTATTCGATTGGCGTCGCAATGACGATGAACCGTGACGTGGGCAACACGGAGCGCACGATGGGCCGCCCGAGCTTCC
AGGAGTTCGGTCTCACCAAGGCGACCGATCAGGCCACGCCGGCACTCTATTCAGCATGTGCGGCGGGCACCAAGCTCGGC
GATGCGACGATTTCGATCGGTCGCAACGAAAACGGCAAGTTCATGTCTCTGCTGCAGTACACGTTGAGCGACGCGATGAT
CTCGACGATCGCAACCAGCGGCAGCGGTGAATCGGTCGACAGCTTCTCCATCAACTTCTCGAAGATTACGACCGTCTACA
CGCAGCAGAACGTCGACTCGACCAAAAAGGGTACGGCTTCTTTCGGCTGGGATCTGTCGAAGAACGTGTCGGCGCCGCCG
GCGGGCTGA