Detailed information of component protein


Summary

Component ID T6CP002739
Component protein type TssC
T6SS ID (Type) T6SS00274 experimental (Type i4a)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (503 a.a.); Nucleotide sequence (1509 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS29890
Coordinate (Strand) 511410..512918 (+)
NCBI ID WP_012405202.1
RefSeq NC_010625
Uniprot ID B2JVR5_PARP8
KEGG ID bph:Bphy_5979
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.1e-127 77..377
VipB_2 PF18945.2 5.5e-44 387..497
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-502 MASNTAAGGAARETQTLDASAGAELSLLERIVHEGNMAVEPSQSGYAKKLIGQLASQILDEGMRTSPDKSVVAMINERVAEIDKLLSDQLNAIMHDEAFQALEASWTGLHDMVYGTETGPQLKLRLLNVTKKELLKDLETAVDHDMSTLFKKIYEEEYGTFGGAPYSLLIGDYSFGRHPQDIALLERISKVAAAAHAPFIASAAPGLFDLKSFTDLGVTRDLSKTFESAELAAWRSFRDSEDSRYVSLVLPSYAARLPYGAKTKPVENFNFEEDVDGTDHGKYLWANSAYQLGLRITDAFAKYSWATAIRGVEGGGKVDNMVAHTYKTGEGDIVLKCPTEVTITDRREKELNDLGFIALVNSKGSNFATFFGGQTTNRPKVYNKDAANANAQLSARLPYVLAASRFAHYMKVIMRDKVGSFQSRSDIESYLNNWVADYVLINPSASHAQKARFPLGEARVDVTEVPGKPGAYRATCFLKPHFQMEELTASIRLVAELPAAAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9244 - -


  Protein sequence: 503 a.a.    

>T6CP002739 NC_010625:511410-512918 [Paraburkholderia phymatum STM815] [TssC]
MASNTAAGGAARETQTLDASAGAELSLLERIVHEGNMAVEPSQSGYAKKLIGQLASQILDEGMRTSPDKSVVAMINERVA
EIDKLLSDQLNAIMHDEAFQALEASWTGLHDMVYGTETGPQLKLRLLNVTKKELLKDLETAVDHDMSTLFKKIYEEEYGT
FGGAPYSLLIGDYSFGRHPQDIALLERISKVAAAAHAPFIASAAPGLFDLKSFTDLGVTRDLSKTFESAELAAWRSFRDS
EDSRYVSLVLPSYAARLPYGAKTKPVENFNFEEDVDGTDHGKYLWANSAYQLGLRITDAFAKYSWATAIRGVEGGGKVDN
MVAHTYKTGEGDIVLKCPTEVTITDRREKELNDLGFIALVNSKGSNFATFFGGQTTNRPKVYNKDAANANAQLSARLPYV
LAASRFAHYMKVIMRDKVGSFQSRSDIESYLNNWVADYVLINPSASHAQKARFPLGEARVDVTEVPGKPGAYRATCFLKP
HFQMEELTASIRLVAELPAAAA*

  Nucleotide sequence: 1509 bp    

>T6CP002739 NC_010625:511410-512918 [Paraburkholderia phymatum STM815] [TssC]
ATGGCAAGCAACACTGCGGCCGGCGGCGCCGCACGCGAAACGCAGACACTCGACGCTTCAGCGGGTGCGGAACTGAGCCT
GCTCGAGCGCATCGTTCATGAAGGCAACATGGCGGTCGAGCCGTCGCAAAGCGGCTACGCGAAAAAGCTGATCGGTCAGC
TCGCTTCGCAGATTCTCGACGAAGGCATGCGCACCAGCCCGGACAAGAGCGTGGTCGCAATGATCAACGAACGTGTCGCT
GAAATCGACAAATTGCTGTCGGACCAGCTAAACGCAATCATGCACGATGAAGCGTTCCAGGCGCTCGAAGCCTCATGGAC
AGGCTTGCATGATATGGTCTACGGCACCGAAACCGGACCGCAATTGAAGCTTCGCCTGCTGAATGTGACGAAGAAGGAAC
TGCTCAAGGACCTTGAAACGGCCGTCGACCACGACATGAGCACGCTCTTCAAGAAAATCTATGAAGAGGAATACGGCACA
TTCGGTGGTGCACCGTATTCGCTGCTGATCGGCGACTATTCGTTTGGCCGTCATCCGCAGGATATCGCGCTGCTCGAGCG
TATCTCCAAAGTGGCTGCTGCCGCGCACGCTCCGTTTATTGCTTCAGCAGCGCCTGGACTGTTCGATCTGAAATCATTTA
CGGACCTCGGCGTCACCCGCGATCTGTCGAAGACCTTCGAAAGCGCCGAACTCGCCGCATGGCGCAGCTTCCGCGATTCG
GAAGACTCGCGTTATGTTTCTCTGGTGCTGCCTTCGTATGCCGCGCGCCTGCCGTACGGAGCGAAGACGAAGCCCGTCGA
GAACTTCAATTTCGAAGAAGATGTAGACGGTACGGATCACGGCAAGTATCTTTGGGCAAACTCGGCTTACCAGCTCGGCC
TGCGCATCACCGATGCGTTCGCGAAGTACAGCTGGGCGACGGCGATCCGCGGCGTGGAAGGCGGTGGCAAGGTCGACAAC
ATGGTGGCGCACACGTACAAGACCGGCGAAGGCGACATCGTTCTCAAATGCCCGACTGAAGTAACGATCACGGATCGTCG
CGAGAAGGAACTGAACGACCTCGGTTTCATCGCACTGGTGAATTCGAAAGGCTCGAACTTCGCGACCTTCTTCGGCGGTC
AGACGACCAACCGTCCCAAGGTCTACAACAAGGATGCCGCCAATGCCAACGCGCAGCTTTCGGCTCGCCTGCCGTACGTG
CTCGCCGCGTCGCGCTTCGCGCACTACATGAAAGTGATCATGCGCGACAAGGTCGGAAGTTTCCAGTCGCGCAGCGATAT
CGAATCTTATCTGAACAACTGGGTTGCCGATTACGTACTGATCAATCCCTCGGCGTCGCACGCTCAGAAGGCGCGTTTCC
CGCTGGGCGAAGCACGTGTGGACGTGACGGAAGTGCCGGGCAAGCCGGGCGCATACCGCGCGACCTGCTTCCTGAAACCG
CATTTCCAGATGGAAGAGTTGACCGCGTCGATTCGTCTCGTCGCGGAACTGCCGGCAGCGGCAGCCTGA