Detailed information of component protein


Summary

Component ID T6CP002720
Component protein type TssK
T6SS ID (Type) T6SS00272 experimental (Type i1)
Strain Proteus mirabilis HI4320
Replicon chromosome
Sequence Protein sequence (453 a.a.); Nucleotide sequence (1359 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PMI_RS03650
Coordinate (Strand) 821407..822765 (-)
NCBI ID WP_004247647.1
RefSeq NC_010554
Uniprot ID B4ET54_PROMH
KEGG ID pmr:PMI0742
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2e-145 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-452 MSTKNRVIWREGLFIKPQHFQQQQRHQDYMTVSILNNFFSHFWGFSTLKLSDDLYALGRIGIKEASGVMPDGTIFSIPNQDLLPQPIDITNITDSDSSIIYLAFPLMNENVSEISTEHNGSRLLSRYSESTENIRDLHTENGDISAIHVAQLTPILKQGKHGLDAYVALPICRIRERNANGNLTLDNDYIPSLLNIRASTLLSQFLTELEGTLYERGKQIASRIGAPGQQGVADVAEFMMLQVLNRTYPLYSHYAQEPVIHPEKLFRDLLELCGELQTFTNTSRLPENIAKYQHAKLTESYIPLIASIREALSVVLTPRAIPIPLQVQEHGIRVATIHDKQLLQRAEFIIAVKSQMPQEQLRRQFPQQTKVTTINNIRSLVSVQIPGVPLSPLSAAPRQLPYHSGYNYFHFDQQGNEWKGIQQDGNIAFHVSGNFPDLDIQLWAIRDGALYD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -


  Protein sequence: 453 a.a.    

>T6CP002720 NC_010554:c822765-821407 [Proteus mirabilis HI4320] [TssK]
MSTKNRVIWREGLFIKPQHFQQQQRHQDYMTVSILNNFFSHFWGFSTLKLSDDLYALGRIGIKEASGVMPDGTIFSIPNQ
DLLPQPIDITNITDSDSSIIYLAFPLMNENVSEISTEHNGSRLLSRYSESTENIRDLHTENGDISAIHVAQLTPILKQGK
HGLDAYVALPICRIRERNANGNLTLDNDYIPSLLNIRASTLLSQFLTELEGTLYERGKQIASRIGAPGQQGVADVAEFMM
LQVLNRTYPLYSHYAQEPVIHPEKLFRDLLELCGELQTFTNTSRLPENIAKYQHAKLTESYIPLIASIREALSVVLTPRA
IPIPLQVQEHGIRVATIHDKQLLQRAEFIIAVKSQMPQEQLRRQFPQQTKVTTINNIRSLVSVQIPGVPLSPLSAAPRQL
PYHSGYNYFHFDQQGNEWKGIQQDGNIAFHVSGNFPDLDIQLWAIRDGALYD*

  Nucleotide sequence: 1359 bp    

>T6CP002720 NC_010554:c822765-821407 [Proteus mirabilis HI4320] [TssK]
ATGTCAACTAAAAATAGAGTGATCTGGCGTGAAGGGCTATTTATCAAACCTCAACATTTTCAACAACAACAACGTCATCA
AGATTATATGACGGTGAGTATTTTAAATAACTTTTTTTCACACTTTTGGGGATTTAGTACCTTAAAATTGAGTGACGATT
TATATGCTTTAGGTCGTATTGGTATTAAAGAAGCTTCTGGTGTTATGCCAGACGGCACCATTTTCTCTATACCAAACCAA
GATTTACTACCACAGCCTATTGATATAACGAATATTACTGATAGTGACAGCAGTATTATTTATCTAGCTTTTCCTTTAAT
GAACGAGAATGTCAGTGAAATTTCCACTGAACATAACGGTAGTCGTTTACTTTCTCGCTACAGCGAAAGCACCGAAAATA
TTCGTGATTTACATACTGAAAATGGTGATATCAGTGCTATTCATGTTGCACAGCTCACACCAATACTCAAACAAGGTAAA
CATGGTTTAGATGCCTATGTTGCTTTACCTATCTGTCGTATTAGAGAGCGTAATGCTAATGGTAATTTAACGCTAGATAA
TGATTATATTCCCAGCCTATTAAATATCCGTGCCTCAACATTATTGAGCCAATTTCTCACCGAGCTTGAAGGAACGCTAT
ATGAAAGAGGAAAACAAATTGCCTCTCGCATTGGTGCCCCAGGTCAGCAAGGTGTTGCGGATGTGGCAGAATTTATGATG
TTACAAGTGCTTAATCGCACTTATCCACTCTATTCGCATTATGCTCAAGAGCCGGTGATCCATCCTGAAAAACTATTTCG
AGATTTATTAGAGCTTTGTGGTGAACTACAAACATTCACGAATACTTCACGTTTACCTGAAAATATTGCCAAATATCAAC
ATGCTAAATTAACAGAAAGTTATATTCCATTAATAGCCAGTATCCGCGAAGCACTCAGTGTTGTCTTAACACCAAGAGCG
ATCCCAATCCCGCTACAAGTTCAAGAGCATGGTATTCGTGTAGCAACCATTCATGACAAACAACTGCTACAACGAGCTGA
ATTTATTATTGCGGTGAAATCACAAATGCCGCAAGAGCAACTACGTCGCCAATTCCCACAACAAACTAAGGTGACAACAA
TCAATAACATTCGCAGCTTGGTTAGTGTGCAAATACCGGGTGTTCCTTTATCACCACTTTCGGCTGCACCAAGACAATTA
CCTTATCACTCGGGATATAACTATTTCCATTTTGATCAACAAGGCAATGAATGGAAAGGGATCCAGCAGGATGGCAACAT
CGCATTCCACGTTTCAGGAAACTTCCCCGATCTCGATATTCAGTTATGGGCAATAAGAGATGGAGCACTCTATGACTGA