Detailed information of component protein


Summary

Component ID T6CP002718
Component protein type TssH
T6SS ID (Type) T6SS00272 experimental (Type i1)
Strain Proteus mirabilis HI4320
Replicon chromosome
Sequence Protein sequence (904 a.a.); Nucleotide sequence (2712 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PMI_RS03640
Coordinate (Strand) 817939..820650 (-)
NCBI ID WP_012367721.1
RefSeq NC_010554
Uniprot ID B4ET52_PROMH
KEGG ID pmr:PMI0740
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4e-37 641..802
AAA_lid_9 PF17871.3 4e-29 360..451
ClpB_D2-small PF10431.11 2.7e-09 809..882
AAA PF00004.31 4e-09 221..332
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-903 MIQIDLSTLVNRLHPIAKHALESAAAYCVSHQQPEITIAQFLQKLIETPLTDIRMISQKSALDINALSELLDIDIPPHQVITQSYPSFSPLLVEWMKDSWLLASTELNHSELRSGALFLTLLQMPLRYLAKPVADMLAQINRDQLKLNFDQWTEGSAESPFNEKTVSEKGNLAADSLLAKFTHNMTEQARNGELDPVLCRDNEIDLMIDILCRRRKNNPVVVGEPGVGKSALIEGLALRIIAGDIPDKLRGCELLTLDLGALQAGAAVKGEFEKRFKGIMQEVTQSPHPIILFIDEAHTLIGAGNQQGGLDVSNLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQLVQVKEPSSAEAIIIMRGLRSIYEKSHHVFIDDEALRASAELSERYISGRQLPDKAIDVLDTACARAAINLSSPPKALSSLKTELHQINMEMDVLQREHYLGLDDHSERLETLASQASAIEQQATDLQQAWEQQKELVSQIITLRATLLNNATEATNDDVANDVANNEVVSDIRTYSEAEDAEDNDEKIAAQPPCSSEELKQQLQQLDKQLAQLHDTHLLVSPHVDKKQIAAVIAEWTGVPLNRLSQDALSIVTELPTYLEESIKGQSLAIQCLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVIQIAQLMFGGTQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKRPYSVVLLDEVEKAHPDVLNLFYQAFDKGEIADGEGRVIDCKNIAFFLTSNLGDHVITAYADKPDELEDALYPELTTFFKPALLARMEVIPYLPLPAEVLRQIVDGKLARLINLLKQRFNAEINVEESVATEILRRASRAENGARILESIIDGALLPPLSLLLLQYSARNEAISHIRLATENDEFIAEVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9907 - -


  Protein sequence: 904 a.a.    

>T6CP002718 NC_010554:c820650-817939 [Proteus mirabilis HI4320] [TssH]
MIQIDLSTLVNRLHPIAKHALESAAAYCVSHQQPEITIAQFLQKLIETPLTDIRMISQKSALDINALSELLDIDIPPHQV
ITQSYPSFSPLLVEWMKDSWLLASTELNHSELRSGALFLTLLQMPLRYLAKPVADMLAQINRDQLKLNFDQWTEGSAESP
FNEKTVSEKGNLAADSLLAKFTHNMTEQARNGELDPVLCRDNEIDLMIDILCRRRKNNPVVVGEPGVGKSALIEGLALRI
IAGDIPDKLRGCELLTLDLGALQAGAAVKGEFEKRFKGIMQEVTQSPHPIILFIDEAHTLIGAGNQQGGLDVSNLLKPAL
ARGELRTIAATTWSEYKKYFEKDAALARRFQLVQVKEPSSAEAIIIMRGLRSIYEKSHHVFIDDEALRASAELSERYISG
RQLPDKAIDVLDTACARAAINLSSPPKALSSLKTELHQINMEMDVLQREHYLGLDDHSERLETLASQASAIEQQATDLQQ
AWEQQKELVSQIITLRATLLNNATEATNDDVANDVANNEVVSDIRTYSEAEDAEDNDEKIAAQPPCSSEELKQQLQQLDK
QLAQLHDTHLLVSPHVDKKQIAAVIAEWTGVPLNRLSQDALSIVTELPTYLEESIKGQSLAIQCLHKHLLTARADLRRPG
RPLGAFLLAGPSGVGKTETVIQIAQLMFGGTQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKRPYSVVL
LDEVEKAHPDVLNLFYQAFDKGEIADGEGRVIDCKNIAFFLTSNLGDHVITAYADKPDELEDALYPELTTFFKPALLARM
EVIPYLPLPAEVLRQIVDGKLARLINLLKQRFNAEINVEESVATEILRRASRAENGARILESIIDGALLPPLSLLLLQYS
ARNEAISHIRLATENDEFIAEVN*

  Nucleotide sequence: 2712 bp    

>T6CP002718 NC_010554:c820650-817939 [Proteus mirabilis HI4320] [TssH]
ATGATCCAAATTGATCTCTCTACTCTCGTTAATCGATTACACCCAATAGCTAAGCATGCCTTAGAAAGTGCAGCCGCTTA
CTGTGTAAGCCACCAGCAACCTGAAATTACGATTGCTCAGTTTCTACAAAAACTGATAGAAACGCCATTAACTGACATTC
GTATGATCAGTCAAAAAAGCGCATTAGATATTAATGCGTTATCAGAGTTATTAGATATCGACATTCCGCCACATCAAGTT
ATTACACAAAGTTATCCTAGTTTTTCACCCTTATTAGTCGAATGGATGAAAGATAGCTGGCTATTAGCGTCAACTGAGCT
AAATCACAGTGAACTTCGCTCTGGTGCATTGTTTTTAACTTTACTACAAATGCCTTTGCGTTATCTTGCGAAACCTGTTG
CCGATATGCTTGCGCAGATTAACCGCGACCAATTAAAACTCAATTTTGATCAATGGACTGAAGGCTCTGCTGAATCGCCT
TTTAACGAAAAAACAGTATCAGAAAAAGGTAACCTTGCCGCTGATTCATTGTTAGCGAAATTTACTCATAACATGACTGA
ACAAGCGCGAAATGGTGAGTTAGATCCGGTCTTATGTCGCGATAATGAAATCGACTTAATGATTGATATTCTGTGCCGTC
GCCGTAAAAACAATCCTGTAGTAGTCGGAGAGCCCGGTGTGGGTAAAAGTGCGTTAATTGAAGGACTAGCACTACGTATT
ATTGCCGGAGATATTCCTGATAAATTAAGAGGTTGTGAACTTCTTACTCTTGATTTAGGCGCATTACAAGCAGGTGCTGC
AGTCAAAGGCGAATTTGAAAAACGCTTTAAAGGCATTATGCAAGAAGTCACTCAATCTCCTCACCCTATCATTCTATTTA
TTGATGAAGCACACACCCTCATTGGTGCAGGTAACCAGCAAGGTGGCTTAGATGTTTCTAATTTATTAAAACCGGCTTTG
GCGCGTGGAGAACTACGAACTATCGCAGCAACGACTTGGAGCGAATACAAAAAATATTTTGAAAAAGATGCCGCGTTAGC
GCGCCGTTTCCAATTAGTGCAAGTCAAAGAGCCATCATCTGCAGAAGCCATTATCATTATGCGTGGCTTACGTAGTATCT
ATGAAAAATCCCACCATGTCTTTATTGATGATGAAGCACTACGAGCCAGTGCTGAATTAAGTGAACGTTATATCTCTGGA
CGTCAATTACCAGACAAAGCCATTGATGTATTAGATACAGCCTGTGCAAGAGCCGCGATTAATCTATCTTCGCCACCAAA
GGCATTATCCTCTTTGAAAACAGAACTCCACCAAATCAATATGGAAATGGATGTATTACAAAGAGAACACTATTTAGGTT
TAGATGATCATTCTGAGCGTCTTGAAACGTTAGCCTCACAAGCAAGTGCTATTGAGCAACAAGCAACTGATTTACAGCAA
GCATGGGAGCAACAAAAAGAGCTTGTATCTCAAATTATTACCTTACGAGCAACATTACTTAATAATGCTACCGAAGCGAC
TAATGACGATGTCGCAAATGATGTTGCAAATAATGAAGTGGTAAGTGATATAAGAACTTATAGTGAAGCAGAAGATGCTG
AAGATAATGATGAAAAAATAGCAGCACAGCCCCCCTGCTCATCTGAAGAATTAAAGCAACAGTTACAACAATTAGATAAA
CAACTTGCTCAGTTACACGACACGCATTTACTGGTTTCGCCTCACGTCGATAAAAAACAAATTGCGGCGGTAATTGCTGA
ATGGACCGGAGTACCATTAAATCGATTATCACAAGATGCATTATCAATTGTCACTGAGTTGCCTACCTACTTGGAAGAGA
GTATCAAAGGCCAATCATTAGCCATTCAATGTTTACACAAACATTTACTCACAGCGCGGGCTGATTTACGTCGACCGGGT
CGACCGCTGGGGGCGTTCTTATTAGCAGGTCCTAGTGGCGTGGGTAAAACAGAAACGGTTATCCAAATTGCCCAATTAAT
GTTCGGTGGCACACAATATCTCACGACTATTAATATGTCTGAGTTTCAAGAAAAACATACTGTTTCTCGCCTTATTGGTT
CACCTCCCGGTTATGTGGGATATGGTGAAGGAGGGATCTTAACAGAAGCTATTCGTAAAAGACCTTACTCAGTTGTTTTA
CTCGACGAAGTAGAGAAAGCGCATCCTGATGTGCTAAATCTATTTTATCAAGCTTTTGATAAAGGAGAGATAGCCGATGG
AGAAGGACGAGTCATTGATTGTAAAAATATCGCATTTTTCCTCACCTCTAATTTAGGTGACCATGTCATTACTGCTTACG
CGGATAAACCGGACGAACTAGAAGATGCACTCTACCCTGAATTAACAACTTTCTTTAAACCAGCATTACTTGCTCGAATG
GAAGTGATCCCTTATTTACCGTTGCCTGCAGAGGTTTTACGACAAATTGTTGATGGCAAATTAGCTCGTCTTATTAACCT
GTTAAAACAGCGTTTCAACGCAGAAATCAATGTAGAAGAGAGTGTTGCTACGGAAATTTTACGCAGAGCTTCTCGTGCTG
AAAATGGTGCGCGTATTTTGGAATCTATTATTGATGGTGCGTTATTGCCGCCTCTTTCTTTATTACTTCTACAATATAGT
GCACGTAATGAAGCTATCTCTCATATCCGCTTAGCGACTGAAAATGATGAGTTTATTGCGGAGGTTAATTAA