Detailed information of component protein


Summary

Component ID T6CP002576
Component protein type TssA
T6SS ID (Type) T6SS00260 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (338 a.a.); Nucleotide sequence (1014 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS17920
Coordinate (Strand) 3928311..3929324 (-)
NCBI ID WP_002210482.1
RefSeq NC_010465
Uniprot ID Q66EQ2_YERPS, A0A0U1QY97_YERP3, Q0WJG6_YERPE, A0A3G5ITG5_YERPU
KEGG ID yps:YPTB0640, ype:YPO0499, ypi:YpsIP31758_3437
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-12 21..129
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-337 MILKRMDNNMSDIFPQALFGVEYDPAYGEIESILSQLDESADPLSRPHEPPQINWHHISEQANKLLEQCFDLRVMLWFIRANIHIKGISALYDGFMRINAQTQDTDVVIYPQSEEPPLNSGHAAALGWLSTAQCIAELKTARLTEEHPYILQDLITTEALPNGQERYFVTSSTLFLTVNNYFQQNGLPDLKDQLTKVDMLLEQIESYANQSTESYQLHCEQLRIFLKNNISQLAQLNAPEHDDPETVYQKIDSHESLDTQSFNSNDKSIRSRQEIIMMLDRILEYFQHYEPSHPAPIFIRRTKEMIGMDFYSIVEEILPEAVITLKQFTGKTNLPFR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9824 - -


  Protein sequence: 338 a.a.    

>T6CP002576 NC_010465:c3929324-3928311 [Yersinia pseudotuberculosis YPIII] [TssA]
MILKRMDNNMSDIFPQALFGVEYDPAYGEIESILSQLDESADPLSRPHEPPQINWHHISEQANKLLEQCFDLRVMLWFIR
ANIHIKGISALYDGFMRINAQTQDTDVVIYPQSEEPPLNSGHAAALGWLSTAQCIAELKTARLTEEHPYILQDLITTEAL
PNGQERYFVTSSTLFLTVNNYFQQNGLPDLKDQLTKVDMLLEQIESYANQSTESYQLHCEQLRIFLKNNISQLAQLNAPE
HDDPETVYQKIDSHESLDTQSFNSNDKSIRSRQEIIMMLDRILEYFQHYEPSHPAPIFIRRTKEMIGMDFYSIVEEILPE
AVITLKQFTGKTNLPFR*

  Nucleotide sequence: 1014 bp    

>T6CP002576 NC_010465:c3929324-3928311 [Yersinia pseudotuberculosis YPIII] [TssA]
TTGATTTTAAAACGGATGGACAATAATATGAGTGACATATTTCCTCAAGCATTATTCGGCGTTGAATATGATCCGGCCTA
TGGCGAGATTGAGTCCATCCTCTCTCAATTAGATGAGTCTGCGGACCCCCTTTCCCGCCCGCATGAACCCCCTCAAATAA
ACTGGCACCATATCAGTGAGCAAGCCAATAAGCTGCTAGAACAATGTTTTGATTTACGTGTAATGCTTTGGTTTATAAGG
GCAAATATTCATATAAAAGGAATCTCGGCCCTCTATGATGGCTTTATGCGCATTAATGCACAAACCCAAGATACTGATGT
TGTTATCTACCCTCAATCGGAAGAACCGCCATTAAATAGTGGGCATGCCGCCGCATTAGGTTGGTTATCTACAGCACAAT
GTATTGCAGAGCTTAAGACTGCACGCCTTACAGAAGAGCACCCTTACATTTTACAAGATCTTATTACGACTGAAGCGTTA
CCCAATGGTCAAGAGAGATATTTTGTTACATCTTCGACATTATTTTTAACTGTCAATAATTATTTCCAACAGAATGGATT
GCCAGATTTAAAAGACCAATTGACAAAAGTAGATATGTTGTTGGAACAAATTGAGTCCTATGCAAATCAATCCACAGAGA
GTTACCAACTGCATTGTGAACAATTACGTATTTTCTTAAAAAATAATATTTCTCAGCTTGCACAATTGAATGCCCCAGAA
CATGACGATCCCGAAACTGTTTATCAAAAAATAGACAGTCATGAATCTCTTGATACTCAGTCCTTTAATTCAAATGATAA
GAGCATTCGCTCACGGCAAGAGATCATTATGATGCTGGACCGTATTCTAGAGTATTTTCAACATTATGAGCCTAGTCATC
CAGCCCCAATATTCATTCGCCGTACCAAAGAGATGATAGGTATGGATTTTTATTCCATTGTTGAAGAAATTCTGCCTGAA
GCTGTAATTACATTAAAACAGTTTACCGGAAAAACTAACCTACCGTTTCGATGA