Detailed information of component protein


Summary

Component ID T6CP002574
Component protein type TssC
T6SS ID (Type) T6SS00260 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS17910
Coordinate (Strand) 3926229..3927731 (-)
NCBI ID WP_002210480.1
RefSeq NC_010465
Uniprot ID A0A0U1QZ31_YERP3
KEGG ID ypi:YpsIP31758_3435
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.4e-127 68..369
VipB_2 PF18945.2 9e-44 380..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNRDVVLTIESLVAEIDEKLSDQMNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNISQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFGCMIGDYEFDHSPQSVALLTELAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLVLTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCSRIRGIESGGSVEELPAYAFPSDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDFAAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFAHYLKCIVRDKIGSFRSRDDMQLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEGMTVSLRLVSKLPSNKESEKK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9091 - -


  Protein sequence: 501 a.a.    

>T6CP002574 NC_010465:c3927731-3926229 [Yersinia pseudotuberculosis YPIII] [TssC]
MQKAQLNDTPDINVDLAENELDDILKRSFRPRTDEASATVRRAIGTLAAYANKGQVKVNRDVVLTIESLVAEIDEKLSDQ
MNLILHHKEFQKLESAWRGLSYLVDNTDANETLKIRVLNISQDELGKTLRRYRGSAWDQSPIFKQVYEHEYGQFGGEPFG
CMIGDYEFDHSPQSVALLTELAKVAAAAHCPFITSSSPSIMQMNNWRELGNPRDIGKIFTTPEYAPWRRLRESNDSRYLV
LTLPRFLSRLPYGAKNHPIDDFAFEEVVSPHASEDFTWANAAYAMGVNINRAFNEYGWCSRIRGIESGGSVEELPAYAFP
SDEGGYELTCPTELAISDRRENELSNAGFLPLVYRKNSDFAAFIGSCTLHAPANYDDPDATANARLSARLPYIFATCRFA
HYLKCIVRDKIGSFRSRDDMQLWLNDWVMNYVDGDPSISTEATKAKRPLAAAEVQVEDVEDDPGFYRAHFYLRPHYQLEG
MTVSLRLVSKLPSNKESEKK*

  Nucleotide sequence: 1503 bp    

>T6CP002574 NC_010465:c3927731-3926229 [Yersinia pseudotuberculosis YPIII] [TssC]
ATGCAGAAAGCCCAACTCAATGACACGCCAGACATCAACGTCGATCTGGCTGAAAACGAGTTAGATGACATTTTAAAACG
TTCTTTTCGCCCTCGAACTGACGAAGCTTCCGCCACAGTGCGCCGTGCCATAGGCACGCTTGCTGCGTATGCCAATAAAG
GCCAAGTGAAAGTCAATCGTGATGTCGTACTGACCATTGAGTCTTTAGTCGCTGAAATTGACGAAAAACTTTCCGATCAA
ATGAACCTTATTCTGCACCATAAAGAGTTCCAAAAGCTGGAATCAGCTTGGCGCGGGCTTAGCTATCTTGTTGATAATAC
AGATGCTAATGAAACTTTAAAAATACGGGTACTGAACATTAGCCAAGATGAACTGGGGAAAACGCTTCGCCGTTATCGTG
GCTCTGCATGGGATCAAAGTCCGATATTTAAACAGGTCTATGAACATGAATATGGGCAGTTTGGTGGGGAACCTTTTGGT
TGCATGATCGGTGATTATGAATTCGATCACAGTCCACAGAGTGTGGCTCTGCTGACCGAGTTAGCCAAGGTGGCCGCCGC
CGCTCACTGTCCTTTCATTACCTCTTCTTCCCCAAGCATCATGCAGATGAATAACTGGAGGGAGCTGGGTAACCCAAGGG
ATATCGGCAAAATTTTTACCACACCTGAATATGCGCCATGGAGACGTTTACGTGAGAGTAATGACTCCCGCTATCTGGTA
CTGACTCTGCCACGTTTTCTTTCGCGTCTGCCGTATGGTGCCAAAAATCATCCTATTGATGATTTTGCTTTTGAAGAAGT
GGTTAGCCCTCATGCCAGTGAGGATTTCACTTGGGCGAATGCGGCCTATGCCATGGGCGTCAATATTAACCGGGCCTTCA
ATGAATATGGTTGGTGTTCAAGGATCCGCGGTATTGAGTCGGGGGGGTCCGTAGAAGAACTTCCGGCCTATGCTTTTCCT
TCTGACGAAGGCGGATATGAACTCACTTGTCCGACAGAATTGGCAATTTCGGACCGTCGTGAGAACGAGCTATCCAATGC
TGGGTTTTTACCGCTGGTCTACCGTAAGAACTCAGACTTTGCCGCCTTTATCGGGTCGTGCACCCTGCATGCACCGGCAA
ACTATGATGACCCCGATGCGACGGCGAACGCCAGATTATCGGCCCGTTTACCTTACATTTTTGCCACCTGTCGTTTCGCC
CATTACCTCAAATGTATTGTGCGCGACAAAATTGGTTCGTTCCGCTCGCGGGATGACATGCAACTTTGGCTTAACGACTG
GGTGATGAACTACGTCGATGGTGACCCCTCCATTTCAACAGAAGCCACTAAAGCTAAACGCCCGCTGGCCGCTGCGGAAG
TTCAAGTTGAAGACGTAGAGGATGATCCTGGTTTTTACCGCGCTCACTTCTATTTACGCCCTCACTACCAACTTGAAGGT
ATGACGGTTTCTCTGCGGCTGGTTTCTAAACTTCCATCCAACAAGGAAAGCGAAAAGAAATAA