SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP002573
Component protein type	TssD
T6SS ID (Type)	T6SS00260 (Type i3)
Strain	Yersinia pseudotuberculosis YPIII
Replicon	chromosome
Sequence	Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference	[1] Zhang W, Xu S, Li J, et al. Modulation of a thermoregulated type VI secretion system by AHL-dependent quorum sensing in Yersinia pseudotuberculosis. Arch Microbiol. 2011 May;193(5):351-63. doi: 10.1007/s00203-011-0680-2. Epub 2011 Feb 5. PMID: 21298257 [2] Zhang W, Wang Y, Song Y, et al. A type VI secretion system regulated by OmpR in Yersinia pseudotuberculosis functions to maintain intracellular pH homeostasis. Environ Microbiol. 2013 Feb;15(2):557-69. doi: 10.1111/1462-2920.12005. Epub 2012 Oct 24. PMID: 23094603 [3] Wang T, Si M, Song Y, et al. Type VI Secretion System Transports Zn2+ to Combat Multiple Stresses and Host Immunity. PLoS Pathog. 2015 Jul 2;11(7):e1005020. doi: 10.1371/journal.ppat.1005020. eCollection 2015 Jul. PMID: 26134274

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPK_RS17905
Coordinate (Strand)	3925548..3926066 (-)
NCBI ID	WP_012304595.1
RefSeq	NC_010465
Uniprot ID	A0A0H3B6E4_YERPY
KEGG ID	ypy:YPK_3563
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	1.3e-38	8..147

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-172	MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEHIPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVIKAGYDLKLNNRI

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9866	-	-

Protein sequence: 173 a.a.

						>T6CP002573 NC_010465:c3926066-3925548 [Yersinia pseudotuberculosis YPIII] [TssD]
MAALVDYFLHIEGVDGESPDQQYNGWIQVQAWQWAEENAGRWGLGGGGGSGKVEMKDFEFRMVSNKASPKLFLMCAIGEH
IPQAKLVCRKSGQGQQDFLIVTFSNCLVSSFKTVGNMPLGKGDAVFTDTVLPTDAISLNFARIEVEYKEQQPDGSMGAVI
KAGYDLKLNNRI*					

Nucleotide sequence: 519 bp

						>T6CP002573 NC_010465:c3926066-3925548 [Yersinia pseudotuberculosis YPIII] [TssD]
ATGGCAGCTTTAGTCGATTACTTTCTCCATATCGAAGGTGTAGATGGTGAGTCTCCCGATCAGCAGTATAACGGATGGAT
CCAAGTACAGGCTTGGCAATGGGCGGAGGAGAATGCGGGGCGCTGGGGGCTAGGTGGTGGTGGTGGTTCTGGGAAAGTCG
AAATGAAGGACTTCGAATTTCGCATGGTGAGTAACAAAGCATCACCAAAACTATTTTTGATGTGTGCCATCGGTGAACAC
ATTCCGCAGGCCAAGTTGGTGTGTCGTAAATCAGGTCAAGGTCAACAAGACTTCCTGATTGTTACCTTCAGTAACTGTCT
GGTGTCCTCCTTTAAAACTGTCGGCAACATGCCTCTTGGTAAAGGGGACGCAGTATTCACCGACACTGTGCTGCCAACGG
ATGCCATCAGCCTTAACTTTGCACGTATCGAAGTGGAATACAAAGAGCAGCAACCTGATGGCTCGATGGGGGCCGTGATT
AAGGCTGGTTACGATCTGAAATTGAACAACCGTATTTAA					