Detailed information of component protein


Summary

Component ID T6CP002572
Component protein type TssE
T6SS ID (Type) T6SS00260 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (148 a.a.); Nucleotide sequence (444 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPK_RS17900
Coordinate (Strand) 3925031..3925474 (-)
NCBI ID WP_002210478.1
RefSeq NC_010465
Uniprot ID A0A0E8XJ02_9GAMM, Q66EP8_YERPS, A0A0U1QX54_YERP3, A0A0E1NS54_YERPA, A0A0H2YDT9_YERPN, A0A0H3B5N3_YERPY, A0A5P8YL33_YERPE, A0A0T9JBG1_YERPU
KEGG ID ypc:BZ23_120, ype:YPO0503, ypr:BZ20_1451, ypo:BZ17_1913, ypq:DJ40_1725, ypn:YPN_0378, ypu:BZ21_4026, ypy:YPK_3562, ypi:YpsIP31758_3433, ypa:YPA_3593, yps:YPTB0644
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 4.8e-12 25..121

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-147 MDISAPILFDKLSLRHEHVRLPHWREVIVRDIESLLNDSAHSARLKLKKYPHCEASVLNYGLPSLSQQVPVITDLLELARHIQRIIATFESRLDPRSIKVVPLINKGETWVLAILFDIHARCNLPGEEHLVNLRIALDYSYGMVRVL



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -



  Protein sequence: 148 a.a.    

>T6CP002572 NC_010465:c3925474-3925031 [Yersinia pseudotuberculosis YPIII] [TssE]
MDISAPILFDKLSLRHEHVRLPHWREVIVRDIESLLNDSAHSARLKLKKYPHCEASVLNYGLPSLSQQVPVITDLLELAR
HIQRIIATFESRLDPRSIKVVPLINKGETWVLAILFDIHARCNLPGEEHLVNLRIALDYSYGMVRVL*

  Nucleotide sequence: 444 bp    

>T6CP002572 NC_010465:c3925474-3925031 [Yersinia pseudotuberculosis YPIII] [TssE]
ATGGATATTTCAGCACCGATACTTTTTGACAAATTAAGTCTCCGCCATGAACACGTTCGCTTACCTCATTGGCGTGAAGT
GATTGTGCGCGATATTGAATCTTTATTGAATGACTCCGCACACAGTGCCCGGTTGAAGCTAAAAAAGTATCCGCATTGTG
AGGCTTCCGTATTGAATTACGGCCTGCCTTCGCTCAGCCAGCAGGTTCCGGTAATCACCGACTTGCTGGAACTGGCCAGA
CATATACAGCGGATCATCGCCACGTTTGAGTCACGCCTGGATCCGCGCTCAATAAAAGTGGTGCCGCTGATTAATAAAGG
CGAAACCTGGGTGTTAGCCATCCTGTTTGACATTCATGCCCGGTGCAACCTACCGGGCGAAGAGCACTTGGTCAATTTAC
GCATCGCGCTCGATTACTCCTATGGAATGGTTCGCGTTCTTTAA