Detailed information of component protein


Summary

Component ID T6CP002568
Component protein type TssI
T6SS ID (Type) T6SS00260 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (783 a.a.); Nucleotide sequence (2349 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS17880
Coordinate (Strand) 3917120..3919468 (-)
NCBI ID WP_011191715.1
RefSeq NC_010465
Uniprot ID A0A0E8XF32_9GAMM, Q66EP4_YERPS, A0A0H3B6D9_YERPY
KEGG ID ypy:YPK_3558, ypo:BZ17_1909, yps:YPTB0648
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.7e-71 25..326
Phage_base_V PF04717.14 4.2e-14 380..449
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-782 MQLIEIENEVLSGQDAFPLSFKTQEKVSGNPSYQLVFQVAEADLDLVSLLGEIIKVRIELPDSAGYRTFFTYVIAGADEGQRQDKFVYSLELSTWTWFLMQNRNCRIFQDLNIIDIIEQVFSKYNFADYRFDIVGNYRLREYCVQFAETDFDFVNRLMEDEGVWYYFEHNEDKHTLVMTDQQQFPVLEGHYAELSFLPDSEEMRAIREGIQRIQRSQRIHSSEIVLRDFDFLNPRNTLQTHIEESRQHLQGVPLEWYDYAAGYTDPQHGESIARLRLEAIQSNGQLLSGESNATGLVPGRSFALVQHPDNNRNRGFKLISCDYSFVQDGPDSASQGRNVACKFKALNDDVVYRPQCVTPPPKVPGVQSATVVGARESEVHTDKFARIRVHFHWDRYKTTEDDSSCWIRVVQAWAGKGWGVLAMPRVGQEVLVNYVDGDLDRPMVTGIVYNGENPPPYRLPDHINYSGFVSRSLRFGQPQHASQLTFDDNRGNERIMLHAERDLQRTVERNSATAVGQDKYDTVERTATEWINNHISYKDFSFSVTGMSVSATGISVSTTGTSLSVTGMSTSVTGVSVGFTLIDTSFTGVSTSFTGVGTSFTGASNSLTGVSNSMTGCSSSFTGTSNSMTGSSHSMTGMSTSITGHSMSQTGSSSSITGDSTSFTGSSVSSTGSSVSTTGVSTSTTGSSTSTTGCSVSTTGSSTSTTGNSVSMTGNSTSTTGCSISTTGSSIGTVGSSISTTGSSVSTTGSSISTTGLSVSYTGAQYSDVGVDLKTVGMQSKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 783 a.a.    

>T6CP002568 NC_010465:c3919468-3917120 [Yersinia pseudotuberculosis YPIII] [TssI]
MQLIEIENEVLSGQDAFPLSFKTQEKVSGNPSYQLVFQVAEADLDLVSLLGEIIKVRIELPDSAGYRTFFTYVIAGADEG
QRQDKFVYSLELSTWTWFLMQNRNCRIFQDLNIIDIIEQVFSKYNFADYRFDIVGNYRLREYCVQFAETDFDFVNRLMED
EGVWYYFEHNEDKHTLVMTDQQQFPVLEGHYAELSFLPDSEEMRAIREGIQRIQRSQRIHSSEIVLRDFDFLNPRNTLQT
HIEESRQHLQGVPLEWYDYAAGYTDPQHGESIARLRLEAIQSNGQLLSGESNATGLVPGRSFALVQHPDNNRNRGFKLIS
CDYSFVQDGPDSASQGRNVACKFKALNDDVVYRPQCVTPPPKVPGVQSATVVGARESEVHTDKFARIRVHFHWDRYKTTE
DDSSCWIRVVQAWAGKGWGVLAMPRVGQEVLVNYVDGDLDRPMVTGIVYNGENPPPYRLPDHINYSGFVSRSLRFGQPQH
ASQLTFDDNRGNERIMLHAERDLQRTVERNSATAVGQDKYDTVERTATEWINNHISYKDFSFSVTGMSVSATGISVSTTG
TSLSVTGMSTSVTGVSVGFTLIDTSFTGVSTSFTGVGTSFTGASNSLTGVSNSMTGCSSSFTGTSNSMTGSSHSMTGMST
SITGHSMSQTGSSSSITGDSTSFTGSSVSSTGSSVSTTGVSTSTTGSSTSTTGCSVSTTGSSTSTTGNSVSMTGNSTSTT
GCSISTTGSSIGTVGSSISTTGSSVSTTGSSISTTGLSVSYTGAQYSDVGVDLKTVGMQSKN*

  Nucleotide sequence: 2349 bp    

>T6CP002568 NC_010465:c3919468-3917120 [Yersinia pseudotuberculosis YPIII] [TssI]
ATGCAATTAATTGAGATAGAGAATGAGGTTTTATCGGGCCAGGATGCTTTTCCTCTCTCCTTCAAGACGCAGGAAAAAGT
GTCAGGGAATCCATCCTACCAACTGGTATTTCAGGTAGCAGAAGCGGACCTCGATCTGGTCAGTTTGCTGGGGGAAATCA
TCAAAGTCAGGATTGAGTTACCTGACTCAGCCGGCTACCGGACCTTTTTTACCTATGTGATCGCCGGTGCTGATGAAGGG
CAACGGCAAGACAAATTTGTTTACAGCCTGGAACTGAGTACCTGGACGTGGTTTTTGATGCAAAACCGCAACTGCCGGAT
ATTTCAGGACCTGAATATTATCGATATTATCGAACAGGTATTTTCCAAATATAACTTTGCGGATTACCGTTTTGATATTG
TCGGTAACTATCGGTTACGCGAGTACTGCGTACAGTTTGCAGAAACCGATTTCGACTTTGTTAATCGTCTGATGGAAGAC
GAAGGCGTTTGGTATTACTTCGAACATAACGAAGATAAGCACACGCTGGTCATGACAGATCAGCAACAATTCCCTGTATT
GGAAGGGCATTATGCAGAACTGAGTTTCCTGCCTGACAGTGAAGAGATGCGCGCCATCCGTGAGGGGATACAGCGTATTC
AACGCTCACAACGCATCCACTCCAGCGAAATTGTCTTACGTGACTTCGATTTCCTTAATCCACGCAATACATTACAAACC
CATATCGAAGAAAGCCGCCAACACCTGCAAGGCGTACCACTGGAATGGTATGACTACGCGGCGGGTTACACCGATCCCCA
GCATGGTGAGAGCATCGCCCGTTTACGCCTTGAAGCTATACAGAGTAATGGGCAGCTCTTGTCTGGTGAAAGTAATGCCA
CAGGATTAGTGCCAGGGCGCTCTTTTGCTCTGGTACAGCACCCTGATAACAACCGTAATCGGGGATTCAAACTGATCAGT
TGTGACTACAGTTTTGTCCAGGATGGGCCGGACAGTGCGAGCCAGGGACGTAATGTCGCCTGTAAGTTTAAGGCATTGAA
TGATGACGTCGTTTATCGTCCACAATGTGTCACGCCACCGCCAAAGGTCCCTGGTGTGCAAAGTGCCACAGTGGTCGGTG
CGCGTGAATCAGAAGTGCATACCGATAAGTTCGCCCGTATTCGCGTTCACTTTCACTGGGATCGTTATAAAACCACCGAA
GATGATAGCTCCTGCTGGATCCGCGTTGTACAGGCGTGGGCCGGTAAAGGCTGGGGCGTCCTGGCGATGCCTCGGGTCGG
GCAAGAAGTGCTGGTCAATTACGTTGACGGCGACCTTGATCGCCCGATGGTGACCGGGATCGTCTACAACGGTGAGAACC
CACCGCCTTACCGTTTACCTGACCACATTAACTACTCCGGTTTTGTCTCACGCTCACTGCGCTTTGGTCAGCCACAACAC
GCCAGCCAGCTTACCTTCGATGATAATCGGGGCAATGAGCGGATCATGCTACATGCTGAGCGCGACTTACAAAGAACGGT
TGAACGTAACAGTGCGACGGCCGTCGGTCAGGATAAATACGACACGGTGGAACGGACGGCCACGGAGTGGATCAACAACC
ATATCTCCTACAAAGACTTCAGTTTCTCGGTGACGGGCATGAGTGTCTCCGCGACGGGCATCAGTGTCTCGACAACGGGA
ACGAGCTTATCTGTCACCGGCATGAGCACCAGCGTCACGGGTGTCAGTGTGGGTTTCACCTTGATAGATACCTCCTTTAC
GGGTGTGAGCACATCGTTTACCGGTGTCGGTACCTCCTTCACCGGGGCCAGCAACTCGCTAACCGGTGTCAGCAACTCGA
TGACTGGGTGTAGTTCCTCGTTTACCGGTACTAGCAATAGCATGACAGGCAGTAGCCATAGCATGACCGGCATGAGCACC
AGCATCACCGGGCATAGCATGAGTCAGACGGGTTCCAGTAGCAGCATCACCGGTGACAGTACCTCCTTTACCGGCAGCAG
CGTCAGCAGTACGGGCAGCAGCGTCAGTACGACCGGTGTCAGTACCAGCACTACGGGGAGTAGCACCTCGACTACCGGTT
GTAGCGTCAGTACTACGGGTAGTAGCACCTCGACTACCGGTAATTCAGTCAGCATGACCGGTAACAGCACCAGTACCACG
GGATGCAGTATTTCCACGACGGGCAGCAGTATTGGGACGGTAGGAAGCAGTATCAGCACCACGGGCAGTAGCGTCAGTAC
CACCGGTAGCAGTATCAGCACCACGGGATTATCCGTCAGTTATACCGGCGCTCAATATTCCGATGTGGGTGTCGATCTGA
AAACCGTTGGCATGCAAAGCAAAAACTGA