Detailed information of component protein


Summary

Component ID T6CP002567
Component protein type TssJ
T6SS ID (Type) T6SS00260 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 3912294..3912785 (-)
NCBI ID WP_012304592.1
RefSeq NC_010465
Uniprot ID A0A0H3B6D5_YERPY
KEGG ID ypy:YPK_3553
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-4 MRSL
Transmembrane helix 5-27 FRVLPIFILTGCVLLSGCSWFSS
Inside 28-163 SSEAALQKRRIDLQVVAAPLINPGPNGQAQPLKVCIVELNKEGWSPPGLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSLLMLKSDARADFNRVVLVDGKALSLKASTK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9985 pos: 21-22. LSG-CS. MRSLFRVLPIFILTGCVLLSG


  Protein sequence: 164 a.a.    


  Nucleotide sequence: 492 bp