Detailed information of component protein


Summary

Component ID T6CP002550
Component protein type TssD
T6SS ID (Type) T6SS00258 experimental (Type i3)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) YPK_RS07475
Coordinate (Strand) 1639839..1640324 (+)
NCBI ID WP_002211573.1
RefSeq NC_010465
Uniprot ID A0A0T9MKL1_YERPU, A0A0T9QX71_9GAMM, A0A0U1QUS9_YERP3, A0A5P8YHR4_YERPE, A0A656FFU7_YERPE, A0A6B3T9G1_YERPE
KEGG ID ype:YPO2937, ysi:BF17_22805, ypq:DJ40_3879, ypr:BZ20_3545, ypu:BZ21_1961, ypj:CH55_4142, ypl:CH46_2168, ypc:BZ23_2245, ypv:BZ15_594, ypi:YpsIP31758_1369, ypw:CH59_3137
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.6e-40 6..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMHS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9835 - -



  Protein sequence: 162 a.a.    

>T6CP002550 NC_010465:1639839-1640324 [Yersinia pseudotuberculosis YPIII] [TssD]
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIK
NVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMH
S*

  Nucleotide sequence: 486 bp    

>T6CP002550 NC_010465:1639839-1640324 [Yersinia pseudotuberculosis YPIII] [TssD]
ATGGCGCAAGATATGTTTATCAAAATTGATGGTATTGAAGGTGAGTCTTTGGATGCCAATCACAAAAACGAAATCCAGGT
ATTAGCTTGGAACTGGGATGTTGCTCAACACTCGAATATGCACAGCGGTTCAGGTGGCGGTTCAGGTAAAGCCTCTGTTT
CAGATTTTTGCTTCGCACATTATATCGATAAAGCTAGCCCGAACTTATTGAGCTATTGCTTGCTGGGTAAGCACATTAAA
AATGTTCAGTTCGTACTGCGTAAAGCCGGTGGCGATCCGCTGGAATATCTGACAATTAAATTTACCGATGTCATCATTAC
TCGTGTTGATATGGCGGGTTCTTTGGAAGATGAAACGCGTCCACGTGAAGAAATTCGTTTCTCATTCACTAAGATGACTC
AGGACTATGTTATGCAGAATGCTGAAGGCCATAAATCTGGCGTTATTTCTGCTAACTACGATGTTAAAGCTAACATGCAC
AGCTAA