Detailed information of component protein


Summary

Component ID T6CP002538
Component protein type TssI
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (74 a.a.); Nucleotide sequence (222 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS02065
Coordinate (Strand) 452695..452916 (+)
NCBI ID WP_012303466.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3e-07 2..59
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-73 MVQLKDYTFKNPNWAVAFSEQSGELQNQRPDYEHFDFPGRFKDAQHGQDFTRYRLDALRKIIAEDQAWRYHFQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9864 - -


  Protein sequence: 74 a.a.    

>T6CP002538 NC_010465:452695-452916 [Yersinia pseudotuberculosis YPIII] [TssI]
MVQLKDYTFKNPNWAVAFSEQSGELQNQRPDYEHFDFPGRFKDAQHGQDFTRYRLDALRKIIAEDQAWRYHFQ*

  Nucleotide sequence: 222 bp    

>T6CP002538 NC_010465:452695-452916 [Yersinia pseudotuberculosis YPIII] [TssI]
ATGGTGCAACTGAAAGACTACACCTTTAAAAACCCGAACTGGGCCGTGGCCTTCAGCGAACAGTCGGGAGAACTGCAAAA
CCAGCGACCGGACTACGAGCATTTTGATTTTCCGGGGCGCTTCAAAGATGCCCAGCACGGGCAGGATTTTACCCGCTACC
GGCTGGACGCGCTGCGCAAGATCATCGCGGAAGATCAGGCGTGGCGTTACCACTTCCAGTAG