Detailed information of component protein


Summary

Component ID T6CP002535
Component protein type TssH
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (868 a.a.); Nucleotide sequence (2604 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01980
Coordinate (Strand) 429095..431698 (+)
NCBI ID WP_012303453.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.1e-37 602..763
AAA_lid_9 PF17871.3 2.5e-28 362..454
ClpB_D2-small PF10431.11 4.5e-08 769..843
AAA PF00004.31 6.1e-08 222..333
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-867 MIQIDLPTLVNRLNPIARHSLEAAAAHCVSQQEAEITVSQVLLQMISTPLCDVRLILSHAGVEEDELRESLDQRVSGYQAITQAYPSFSPLLVEWLQDSWLLASTEMEHSQLRSGVMLLTLLLSPSRYLVPTANRLLSPINRELLRQNFANWTADSAETPRAEKGAEAGNGAEINGDSLLARYASNMTEQARNGELDPVLCRDTEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLALRIVDNQVPEKLRNSELMTLDLGALQAGAAVKGEFEKRFKGIMAEIAQSTTPIILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPSAQEATIIMRGLRTVYEQAHGVLIDDEALQAAAVLSDRYISGRQLPDKAIDVLDTAAARVAINLTSAPRQVSALKNELYHQGMEIEMLEREQRLSLSRPDERLSVLQQQRIEIEQQLIALNTGWEKQQHLVQQIIALRAVLLAQEESATDEQVVNLTALSDELERLQQHQTLVSPHVDKSQIAAVIAEWTGVPLNRLSQSELAVVTELPSYLGQQIKGQETAIHCLHQHLLTARADLRRPGRPMGAFLLVGPSGVGKTETVLQIADLLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNIVFFLTSNLGYQTIVDHADEPALLNERLYPELSAFFKPALLARMEVVPYLSLGMETLQIIIHGKLNRLDTLLRQRFSADVVIEPEVIDEILLRATRAENGARMLESIIDGALLPPVSLLLLQKVAAGTAISHIRIAVEGNVFTAQVEGAI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9891 - -


  Protein sequence: 868 a.a.    

>T6CP002535 NC_010465:429095-431698 [Yersinia pseudotuberculosis YPIII] [TssH]
MIQIDLPTLVNRLNPIARHSLEAAAAHCVSQQEAEITVSQVLLQMISTPLCDVRLILSHAGVEEDELRESLDQRVSGYQA
ITQAYPSFSPLLVEWLQDSWLLASTEMEHSQLRSGVMLLTLLLSPSRYLVPTANRLLSPINRELLRQNFANWTADSAETP
RAEKGAEAGNGAEINGDSLLARYASNMTEQARNGELDPVLCRDTEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLAL
RIVDNQVPEKLRNSELMTLDLGALQAGAAVKGEFEKRFKGIMAEIAQSTTPIILFIDEAHTLIGAGNQQGGLDISNLLKP
ALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPSAQEATIIMRGLRTVYEQAHGVLIDDEALQAAAVLSDRYI
SGRQLPDKAIDVLDTAAARVAINLTSAPRQVSALKNELYHQGMEIEMLEREQRLSLSRPDERLSVLQQQRIEIEQQLIAL
NTGWEKQQHLVQQIIALRAVLLAQEESATDEQVVNLTALSDELERLQQHQTLVSPHVDKSQIAAVIAEWTGVPLNRLSQS
ELAVVTELPSYLGQQIKGQETAIHCLHQHLLTARADLRRPGRPMGAFLLVGPSGVGKTETVLQIADLLYGGRQYLTTINM
SEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNIVF
FLTSNLGYQTIVDHADEPALLNERLYPELSAFFKPALLARMEVVPYLSLGMETLQIIIHGKLNRLDTLLRQRFSADVVIE
PEVIDEILLRATRAENGARMLESIIDGALLPPVSLLLLQKVAAGTAISHIRIAVEGNVFTAQVEGAI*

  Nucleotide sequence: 2604 bp    

>T6CP002535 NC_010465:429095-431698 [Yersinia pseudotuberculosis YPIII] [TssH]
ATGATTCAAATTGACTTGCCCACACTCGTAAACCGCCTTAATCCCATTGCCCGCCATTCTCTGGAAGCGGCGGCGGCGCA
TTGCGTCAGTCAGCAGGAAGCTGAAATTACGGTCTCCCAAGTGCTACTGCAAATGATCTCCACACCATTATGTGATGTCA
GGTTAATCCTGAGCCATGCGGGTGTTGAGGAGGATGAACTACGGGAGTCGCTCGATCAACGTGTTTCAGGCTATCAAGCT
ATTACCCAGGCCTACCCGAGTTTTTCCCCATTACTGGTGGAATGGTTACAAGACAGTTGGTTGCTGGCATCGACAGAGAT
GGAACACAGCCAACTCCGTAGCGGCGTGATGTTATTGACGTTATTGCTCAGCCCGTCGCGCTATCTGGTCCCCACGGCCA
ACCGGCTACTGTCCCCGATTAACCGTGAGTTACTGCGTCAGAATTTTGCTAACTGGACGGCAGACTCAGCAGAAACACCG
CGAGCAGAAAAAGGGGCTGAAGCTGGCAACGGCGCAGAAATCAATGGTGACAGCTTGCTGGCCCGCTATGCCAGCAATAT
GACCGAACAGGCCCGTAACGGCGAATTAGACCCTGTGCTGTGTCGGGATACCGAAATTGATCTGATGATCGATATTCTGT
GCCGCCGCCGCAAAAATAACCCGATAGTGGTGGGTGAAGCGGGGGTAGGGAAAAGTGCGCTGATCGAAGGTTTAGCCCTG
CGTATCGTGGATAATCAGGTGCCAGAAAAACTGCGTAACAGCGAGTTGATGACGCTGGATTTAGGCGCGCTTCAGGCTGG
TGCGGCAGTGAAAGGCGAATTTGAGAAGCGTTTCAAGGGCATCATGGCGGAAATTGCGCAGTCCACGACGCCAATTATCC
TGTTTATTGATGAAGCACACACGCTGATCGGGGCCGGTAACCAACAGGGCGGATTAGACATTTCCAATCTGCTCAAACCC
GCTTTAGCGCGTGGTGAACTGAAAACGATTGCGGCAACCACCTGGAGCGAATACAAAAAATACTTTGAAAAAGATGCTGC
GCTGTCGCGCCGTTTCCAGTTGGTCAAAGTTTCTGAACCCAGCGCGCAAGAGGCCACGATTATCATGCGTGGCCTACGTA
CAGTTTATGAACAGGCGCATGGCGTCCTGATCGATGATGAAGCATTGCAAGCTGCGGCGGTGCTCAGTGACCGCTATATT
TCAGGGCGGCAGTTGCCAGATAAAGCCATCGACGTGTTAGATACCGCAGCCGCACGTGTTGCCATCAATCTCACCTCTGC
ACCGCGTCAGGTTTCGGCACTGAAAAACGAACTCTACCATCAGGGGATGGAAATCGAGATGCTGGAGCGGGAGCAACGCC
TCAGCTTAAGCCGCCCGGATGAGCGGTTATCCGTTTTACAACAGCAGCGAATTGAGATCGAACAGCAACTCATTGCCCTG
AATACCGGTTGGGAAAAGCAACAACATTTGGTCCAGCAGATTATCGCACTGAGAGCGGTCCTGTTGGCACAAGAAGAGAG
CGCCACAGATGAGCAAGTGGTCAATCTGACAGCGCTGAGCGATGAGTTGGAACGGTTGCAACAGCACCAGACGCTGGTCT
CGCCCCATGTGGATAAGAGCCAGATTGCGGCGGTGATCGCGGAATGGACCGGTGTACCGCTAAACCGCCTTTCTCAGAGT
GAATTGGCAGTGGTCACTGAATTGCCCTCTTATCTGGGGCAGCAGATCAAAGGACAAGAGACGGCTATCCATTGCTTGCA
CCAACACTTGCTGACCGCAAGGGCGGATTTACGTCGCCCAGGTCGCCCAATGGGGGCTTTCCTGTTGGTTGGGCCTAGCG
GCGTGGGTAAAACGGAAACCGTGCTACAGATTGCCGACCTGCTCTATGGTGGCCGCCAATATCTCACCACCATCAATATG
TCCGAATTCCAAGAGAAGCATACCGTCTCGCGCCTGATTGGTTCACCTCCGGGCTACGTCGGGTATGGTGAAGGCGGCGT
ACTGACCGAAGCTATTCGTCAAAAACCTTACTCGGTAGTGCTACTGGATGAAGTGGAAAAAGCCCACCCCGATGTGCTGA
ATCTGTTTTATCAGGCCTTCGATAAGGGCGAGTTGGCGGACGGTGAAGGCCGCATCATCGATTGCAAAAATATCGTATTT
TTCCTGACCTCCAATCTGGGATACCAGACCATTGTTGATCATGCAGACGAGCCTGCATTGCTCAATGAACGGCTCTACCC
CGAGCTATCGGCATTCTTTAAACCTGCGCTACTGGCCCGCATGGAAGTGGTTCCTTATCTGTCGCTGGGCATGGAAACGC
TGCAAATTATCATTCACGGCAAACTGAACCGTCTGGATACGCTGCTGCGCCAACGCTTTAGTGCTGATGTGGTCATTGAA
CCTGAAGTGATCGACGAAATCCTGCTACGCGCGACCCGTGCCGAAAATGGTGCGCGTATGCTCGAGTCGATTATCGACGG
TGCGCTATTACCACCGGTTTCTCTGTTGTTATTACAGAAAGTGGCCGCTGGCACCGCTATCAGCCACATTCGGATCGCGG
TAGAGGGGAATGTGTTTACTGCACAGGTTGAGGGAGCGATATGA