Detailed information of component protein


Summary

Component ID T6CP002534
Component protein type TssL
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (256 a.a.); Nucleotide sequence (768 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01975
Coordinate (Strand) 428317..429084 (+)
NCBI ID WP_002212106.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 2e-57 36..239
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-218 MKTDAVTDNTPFPAAEAVTSHRQYQLPLRGESLNAMIDTATPLLGMVLRLKDMENQALPDQLYQQVVTDIRAIEQYLQTKGYEPGAIISFRYVLCTFIDETALGHGWNTQNGWLQQSLLVHFHNETWGGEKVYVLLERLMGEPKRYQDLLEFIYLCFCLGYRGRYKVTSQNGDDFERLFRRLHHQLQQLRGDAPPTVLYQGGGRLNSRYHLSKRLTIK
Transmembrane helix 219-241 HLLWGGVSLLVVIYLFYAIHLHT
Outside 242-255 QSQDILQQLNNLLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -


  Protein sequence: 256 a.a.    

>T6CP002534 NC_010465:428317-429084 [Yersinia pseudotuberculosis YPIII] [TssL]
MKTDAVTDNTPFPAAEAVTSHRQYQLPLRGESLNAMIDTATPLLGMVLRLKDMENQALPDQLYQQVVTDIRAIEQYLQTK
GYEPGAIISFRYVLCTFIDETALGHGWNTQNGWLQQSLLVHFHNETWGGEKVYVLLERLMGEPKRYQDLLEFIYLCFCLG
YRGRYKVTSQNGDDFERLFRRLHHQLQQLRGDAPPTVLYQGGGRLNSRYHLSKRLTIKHLLWGGVSLLVVIYLFYAIHLH
TQSQDILQQLNNLLS*

  Nucleotide sequence: 768 bp    

>T6CP002534 NC_010465:428317-429084 [Yersinia pseudotuberculosis YPIII] [TssL]
ATGAAAACAGATGCTGTGACTGACAACACCCCTTTCCCCGCAGCGGAAGCGGTCACCTCCCATCGGCAGTATCAGCTACC
GCTACGTGGCGAAAGCTTGAACGCGATGATCGATACCGCCACCCCATTATTGGGGATGGTACTGCGCCTGAAAGACATGG
AAAACCAAGCGTTACCGGACCAGCTATATCAGCAGGTGGTGACGGATATCCGTGCTATTGAGCAGTACTTGCAAACCAAA
GGCTACGAACCCGGCGCAATCATATCTTTCCGATATGTGCTGTGCACATTCATCGATGAAACGGCATTAGGGCATGGCTG
GAACACCCAAAACGGTTGGTTACAGCAATCTCTGTTGGTGCATTTTCATAATGAAACCTGGGGCGGAGAGAAAGTGTACG
TCCTGTTGGAACGCTTAATGGGGGAACCCAAGCGTTACCAAGACCTGCTGGAGTTTATCTATCTCTGTTTTTGTTTGGGT
TACCGCGGCCGCTACAAAGTGACATCACAAAACGGTGATGACTTTGAGCGATTGTTCCGCCGATTGCATCATCAATTACA
GCAGTTACGGGGTGATGCGCCGCCGACGGTCCTTTATCAAGGGGGCGGCCGTCTGAATAGCCGCTACCACTTGAGTAAGC
GGTTGACTATCAAGCATTTGTTATGGGGTGGCGTGAGTCTGCTGGTGGTGATTTATCTGTTTTATGCCATCCACCTGCAC
ACCCAAAGTCAGGATATTTTGCAACAGCTAAACAATTTATTGAGCTAG