Detailed information of component protein


Summary

Component ID T6CP002532
Component protein type TssJ
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (182 a.a.); Nucleotide sequence (546 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01965
Coordinate (Strand) 426423..426968 (+)
NCBI ID WP_012104358.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 3.3e-30 52..172
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MNNARG
Transmembrane helix 7-29 YLLTWALCVVFLLSGCSGAWEAT
Outside 30-181 KKVGKVVMDPDIPVGQAADQPSTVRLTLLSDRDTNPNEKGEAAPTEIVVVYLSENSKLLAADYDQLSSDALEKTLGKNYIDHQEYTLLPDQFKALDPIKLEEKNSYLGVIAHYADANRSEWKKIIKIKGIGHNYQVLVHVRSNDVDLRKEEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9975 pos: 21-22. LSG-CS. MNNARGYLLTWALCVVFLLSG


  Protein sequence: 182 a.a.    

>T6CP002532 NC_010465:426423-426968 [Yersinia pseudotuberculosis YPIII] [TssJ]
MNNARGYLLTWALCVVFLLSGCSGAWEATKKVGKVVMDPDIPVGQAADQPSTVRLTLLSDRDTNPNEKGEAAPTEIVVVY
LSENSKLLAADYDQLSSDALEKTLGKNYIDHQEYTLLPDQFKALDPIKLEEKNSYLGVIAHYADANRSEWKKIIKIKGIG
HNYQVLVHVRSNDVDLRKEEE*

  Nucleotide sequence: 546 bp    

>T6CP002532 NC_010465:426423-426968 [Yersinia pseudotuberculosis YPIII] [TssJ]
ATGAACAACGCCAGAGGCTATCTCCTGACGTGGGCATTATGTGTAGTGTTCCTATTGTCTGGGTGCAGCGGTGCATGGGA
AGCCACTAAAAAGGTCGGCAAGGTGGTTATGGACCCCGATATTCCGGTGGGGCAGGCTGCTGATCAACCCTCAACGGTCA
GGCTAACATTGCTGTCCGATCGCGATACCAACCCTAATGAAAAAGGGGAAGCGGCCCCGACTGAGATAGTGGTGGTGTAC
CTAAGTGAAAACTCCAAGCTGCTGGCCGCGGATTATGATCAGCTAAGCAGTGACGCGCTGGAGAAAACGCTGGGTAAGAA
TTACATCGATCATCAGGAATACACCTTACTGCCCGATCAATTCAAGGCGCTGGACCCTATCAAACTGGAAGAGAAAAACA
GCTATCTGGGGGTGATTGCTCACTATGCCGATGCTAACCGCAGTGAATGGAAGAAGATCATCAAAATAAAAGGGATCGGC
CATAACTACCAGGTTTTGGTCCATGTCAGATCAAACGATGTCGATCTAAGGAAAGAGGAAGAATAA