Detailed information of component protein


Summary

Component ID T6CP002531
Component protein type TssG
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01955
Coordinate (Strand) 423911..424981 (+)
NCBI ID WP_012303451.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.4e-90 32..342
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-356 MAGTDRSTCTDVSVVEDVSGVEARPEGQALDVSRYNFFQLVELLNQLAVAWQGAAPVATPANEAIRFKSTASLAFPTRDVIALDTSARGQFELEVSFLGLHGSQSPLPGYYLDSLAWEDAQNENRLTDFMNVFNHRLLTLLHQIWRKYRYYICFDNGGDDAFSQRMFSLVGLGSEVVRNKLQINHSKMLAYAGLLASPGRAPEVICSLVSHCFNLPDITLHSWQLRKVDIAPSQQNRLGMRVKVRGKKYDEKSVLGVNFSIGSRVADRSGKFLLCINKLTREQFLSFLPNGANYASLVMFVAFIMRDQFAWDLRLGLAEQQVGGMVLGTEQNSLLGWTSILGDPEQKPSVTIGVME


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9265 - -


  Protein sequence: 357 a.a.    

>T6CP002531 NC_010465:423911-424981 [Yersinia pseudotuberculosis YPIII] [TssG]
MAGTDRSTCTDVSVVEDVSGVEARPEGQALDVSRYNFFQLVELLNQLAVAWQGAAPVATPANEAIRFKSTASLAFPTRDV
IALDTSARGQFELEVSFLGLHGSQSPLPGYYLDSLAWEDAQNENRLTDFMNVFNHRLLTLLHQIWRKYRYYICFDNGGDD
AFSQRMFSLVGLGSEVVRNKLQINHSKMLAYAGLLASPGRAPEVICSLVSHCFNLPDITLHSWQLRKVDIAPSQQNRLGM
RVKVRGKKYDEKSVLGVNFSIGSRVADRSGKFLLCINKLTREQFLSFLPNGANYASLVMFVAFIMRDQFAWDLRLGLAEQ
QVGGMVLGTEQNSLLGWTSILGDPEQKPSVTIGVME*

  Nucleotide sequence: 1071 bp    

>T6CP002531 NC_010465:423911-424981 [Yersinia pseudotuberculosis YPIII] [TssG]
ATGGCCGGTACAGACAGGTCAACATGCACTGATGTAAGTGTGGTTGAGGATGTAAGTGGGGTTGAGGCAAGACCCGAAGG
GCAGGCATTGGATGTTTCACGTTATAACTTTTTTCAATTGGTCGAATTGCTCAACCAATTGGCGGTAGCGTGGCAAGGTG
CGGCCCCTGTGGCGACCCCAGCCAATGAAGCCATCCGTTTTAAATCGACCGCCAGTTTAGCATTCCCGACCAGAGATGTG
ATCGCACTGGACACCTCCGCCCGAGGTCAATTTGAGCTAGAGGTCTCTTTCCTTGGATTGCATGGCAGCCAATCGCCGCT
ACCAGGATATTACCTCGATTCGTTAGCGTGGGAGGATGCGCAGAATGAGAACCGGTTGACGGATTTCATGAACGTATTCA
ATCACCGCCTGTTAACGCTACTGCATCAGATTTGGCGTAAATACCGTTACTACATCTGCTTTGACAATGGCGGTGATGAT
GCATTTTCACAACGCATGTTCTCGCTGGTGGGGTTAGGTAGCGAGGTCGTCCGCAATAAATTGCAGATCAATCACAGCAA
AATGCTGGCTTATGCAGGGCTGCTGGCTAGCCCCGGCAGAGCACCTGAAGTAATTTGCAGCCTTGTCTCACATTGCTTCA
ATTTGCCAGATATCACCTTACACAGTTGGCAGCTACGCAAGGTGGATATTGCCCCCTCACAGCAGAATCGCTTGGGGATG
AGGGTGAAAGTCCGTGGCAAGAAATATGATGAAAAGTCAGTGCTTGGCGTTAATTTCTCCATCGGTTCACGGGTTGCGGA
TCGTAGCGGGAAATTTTTGTTGTGCATCAATAAGCTGACGCGAGAACAGTTCTTATCCTTTTTACCCAACGGGGCTAATT
ACGCCTCGTTAGTGATGTTTGTCGCCTTCATTATGCGCGATCAATTCGCGTGGGATTTACGTCTTGGGTTGGCCGAGCAA
CAGGTGGGCGGGATGGTTCTGGGAACCGAGCAAAATAGCCTCTTGGGCTGGACCAGTATCCTCGGCGATCCCGAACAGAA
ACCCAGCGTAACGATTGGTGTAATGGAATAA