Detailed information of component protein


Summary

Component ID T6CP002529
Component protein type TssC
T6SS ID (Type) T6SS00256 insolico (Type i1)
Strain Yersinia pseudotuberculosis YPIII
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPK_RS01940
Coordinate (Strand) 420199..421680 (+)
NCBI ID WP_002230616.1
RefSeq NC_010465
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 4.6e-122 67..366
VipB_2 PF18945.2 3.7e-44 380..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MPLHEENTVLAAEPASATFLLDEIMSQTRMAPGNDGYDIAKQGVAAFISSILDTGTNEEPINKLLVDRMIIELDKKLSAQMDEILHANEFREIESSWRSLKLLVDRTDFRENIKINIMHATKEELLEDFEFSPEIIQSGFYKHVYSSGYGQFGGEPTAAIIGNYAFNNSSPDMKLLQYVSAVGAMAHAPFLSSVAPDFFGISSFTELPAIKDLKSVFEGPAHTKWRALRESEDSRYLGLTTPRFLLRLPYSTVENPIKNFNYYEDVSRNHEHFLWGNTAFLLASCLTDSFAKYRWCPNIIGPQSGGTVHDLPVHLYEAMGQIQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKMAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNIWLKQYIADQENPPTDVRSRRPLRSAQIQVLDVEGDPGWYQVAMQVRPHFKYMGASFELSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -


  Protein sequence: 494 a.a.    

>T6CP002529 NC_010465:420199-421680 [Yersinia pseudotuberculosis YPIII] [TssC]
MPLHEENTVLAAEPASATFLLDEIMSQTRMAPGNDGYDIAKQGVAAFISSILDTGTNEEPINKLLVDRMIIELDKKLSAQ
MDEILHANEFREIESSWRSLKLLVDRTDFRENIKINIMHATKEELLEDFEFSPEIIQSGFYKHVYSSGYGQFGGEPTAAI
IGNYAFNNSSPDMKLLQYVSAVGAMAHAPFLSSVAPDFFGISSFTELPAIKDLKSVFEGPAHTKWRALRESEDSRYLGLT
TPRFLLRLPYSTVENPIKNFNYYEDVSRNHEHFLWGNTAFLLASCLTDSFAKYRWCPNIIGPQSGGTVHDLPVHLYEAMG
QIQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKMAETNYKLGTQLPYMFIINRLA
HYIKVLQREQIGSWKERQDLERELNIWLKQYIADQENPPTDVRSRRPLRSAQIQVLDVEGDPGWYQVAMQVRPHFKYMGA
SFELSLVGRLDKE*

  Nucleotide sequence: 1482 bp    

>T6CP002529 NC_010465:420199-421680 [Yersinia pseudotuberculosis YPIII] [TssC]
ATGCCTTTACATGAAGAAAATACCGTTTTAGCGGCAGAACCTGCCAGTGCAACATTCTTGCTCGACGAAATCATGTCACA
AACCCGTATGGCACCGGGAAACGATGGTTACGATATCGCTAAACAGGGTGTGGCCGCTTTTATTAGCAGTATTCTGGATA
CCGGAACCAACGAAGAGCCGATTAACAAGCTGTTAGTTGACCGCATGATCATCGAACTCGACAAAAAGTTGAGTGCTCAG
ATGGACGAGATCCTACATGCTAACGAATTCCGTGAAATAGAATCTTCATGGCGCTCATTGAAGCTGTTGGTGGATCGGAC
CGATTTCCGTGAAAACATCAAAATCAATATCATGCATGCAACGAAAGAAGAGTTGCTGGAAGATTTTGAGTTCTCGCCAG
AAATTATTCAGTCAGGCTTCTACAAACACGTTTATTCCTCAGGGTACGGCCAATTCGGTGGTGAACCCACTGCCGCGATC
ATTGGTAACTACGCGTTCAACAATAGCTCACCTGACATGAAGCTCTTGCAATACGTAAGTGCTGTTGGCGCGATGGCACA
TGCCCCCTTCTTATCCAGTGTGGCCCCTGATTTCTTTGGCATCAGCAGCTTCACTGAGTTACCCGCGATTAAAGATCTGA
AATCTGTATTTGAAGGGCCGGCTCACACCAAATGGCGTGCTCTGCGTGAGTCTGAAGATTCACGTTATCTTGGTTTGACC
ACCCCTCGTTTCCTGTTGCGCTTACCTTACTCTACTGTTGAAAACCCCATTAAAAACTTCAACTACTACGAGGATGTCAG
CCGGAATCACGAGCATTTCTTGTGGGGCAACACCGCATTCCTGCTAGCGTCCTGCCTGACCGACAGCTTCGCCAAGTACC
GTTGGTGCCCGAATATTATTGGGCCGCAAAGTGGCGGCACGGTTCACGATCTCCCGGTTCATCTCTATGAAGCGATGGGG
CAGATTCAGGCCAAAATCCCAACCGAAGTTCTGATCACTGACCGTCGTGAGTTTGAACTGGCGGAAGAGGGCTTTATCAC
CCTTACCATGCGTAAAGGCAGTGATAACGCCGCATTCTTCTCGGCGAATTCGGTGCAAAAACCAAAAGTCTTCCCGAATA
CCCGCGAAGGGAAAATGGCAGAAACCAACTACAAGTTGGGCACGCAACTGCCGTACATGTTTATCATCAACCGCCTTGCG
CACTACATCAAAGTGCTCCAGCGCGAGCAGATTGGTTCATGGAAAGAACGACAGGATCTGGAGCGCGAGCTCAATATCTG
GCTCAAGCAGTACATTGCCGATCAAGAAAACCCACCAACGGATGTTCGTAGCCGTCGTCCTCTGCGTTCAGCGCAAATCC
AGGTACTGGATGTTGAAGGTGATCCGGGCTGGTACCAGGTTGCGATGCAGGTTCGCCCGCATTTCAAATACATGGGGGCG
AGCTTCGAGCTGTCACTGGTTGGCCGTTTGGATAAGGAATAA