Detailed information of component protein
Summary
External database links
Locus tag (Gene) | YPK_RS01935 |
Coordinate (Strand) | 419634..420131 (+) |
NCBI ID | WP_002212098.1 |
RefSeq | NC_010465 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VipA | PF05591.14 | 3.4e-54 | 8..159 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-165 | MSKNKQSSVAPKERINIKYVPNTGDQVAEIELPLNLLVVGDLKGVREETSIEERQVVSVNKNNFNSVMNEANISLSFNVPNRLEGDGEEDMPVALSIKGLDDFSPDNVAKKVPELKKILELREALVALKGPLGNIPAFRSRLQDLLGNEDMREQLLKELDILNQK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9924 | - | - |
Protein sequence: 166 a.a.
>T6CP002528 NC_010465:419634-420131 [Yersinia pseudotuberculosis YPIII] [TssB]
MSKNKQSSVAPKERINIKYVPNTGDQVAEIELPLNLLVVGDLKGVREETSIEERQVVSVNKNNFNSVMNEANISLSFNVP
NRLEGDGEEDMPVALSIKGLDDFSPDNVAKKVPELKKILELREALVALKGPLGNIPAFRSRLQDLLGNEDMREQLLKELD
ILNQK*
MSKNKQSSVAPKERINIKYVPNTGDQVAEIELPLNLLVVGDLKGVREETSIEERQVVSVNKNNFNSVMNEANISLSFNVP
NRLEGDGEEDMPVALSIKGLDDFSPDNVAKKVPELKKILELREALVALKGPLGNIPAFRSRLQDLLGNEDMREQLLKELD
ILNQK*
Nucleotide sequence: 498 bp
>T6CP002528 NC_010465:419634-420131 [Yersinia pseudotuberculosis YPIII] [TssB]
ATGAGTAAAAATAAGCAAAGCAGTGTTGCCCCAAAAGAAAGGATTAACATCAAGTATGTGCCGAATACTGGCGACCAGGT
TGCAGAAATTGAATTACCGCTGAATCTGCTGGTTGTGGGTGATCTTAAAGGCGTGCGTGAAGAGACTTCAATTGAAGAGC
GTCAGGTTGTTTCGGTCAATAAGAATAACTTCAACTCAGTCATGAACGAAGCAAATATCAGTCTGAGTTTCAATGTGCCT
AATCGCCTTGAAGGTGATGGGGAAGAAGACATGCCGGTCGCCTTGTCGATCAAGGGTCTCGATGATTTCTCGCCTGACAA
TGTGGCGAAAAAAGTTCCAGAGCTCAAAAAAATTCTGGAACTACGGGAAGCGCTAGTGGCATTGAAAGGGCCATTGGGGA
ATATCCCGGCTTTCCGCTCTCGTCTACAGGATTTGCTTGGCAATGAAGATATGCGCGAGCAGTTGCTGAAAGAATTGGAC
ATTCTTAATCAAAAATAA
ATGAGTAAAAATAAGCAAAGCAGTGTTGCCCCAAAAGAAAGGATTAACATCAAGTATGTGCCGAATACTGGCGACCAGGT
TGCAGAAATTGAATTACCGCTGAATCTGCTGGTTGTGGGTGATCTTAAAGGCGTGCGTGAAGAGACTTCAATTGAAGAGC
GTCAGGTTGTTTCGGTCAATAAGAATAACTTCAACTCAGTCATGAACGAAGCAAATATCAGTCTGAGTTTCAATGTGCCT
AATCGCCTTGAAGGTGATGGGGAAGAAGACATGCCGGTCGCCTTGTCGATCAAGGGTCTCGATGATTTCTCGCCTGACAA
TGTGGCGAAAAAAGTTCCAGAGCTCAAAAAAATTCTGGAACTACGGGAAGCGCTAGTGGCATTGAAAGGGCCATTGGGGA
ATATCCCGGCTTTCCGCTCTCGTCTACAGGATTTGCTTGGCAATGAAGATATGCGCGAGCAGTTGCTGAAAGAATTGGAC
ATTCTTAATCAAAAATAA